Result of FASTA (omim) for
pFN21AE1114
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1114, 160 aa
1>>>pF1KE1114 160 - 160 aa - 160 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7134+/-0.000263; mu= 11.6559+/- 0.017
mean_var=89.0080+/-17.907, 0's: 0 Z-trim(121.8): 23 B-trim: 316 in 1/57
Lambda= 0.135944
statistics sampled from 38997 (39027) to 38997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.458), width: 16
Scan time: 5.570
The best scores are: opt bits E(85289)
XP_016885237 (OMIM: 300742,300743) PREDICTED: X an ( 148) 806 166.7 1.3e-41
XP_016885235 (OMIM: 300289,300744,300745) PREDICTE ( 148) 806 166.7 1.3e-41
XP_016885236 (OMIM: 300289,300744,300745) PREDICTE ( 146) 677 141.4 5.5e-34
XP_016885238 (OMIM: 300742,300743) PREDICTED: X an ( 146) 677 141.4 5.5e-34
NP_001091073 (OMIM: 300289,300744,300745) X antige ( 81) 551 116.5 9.6e-27
NP_001091063 (OMIM: 300742,300743) X antigen famil ( 81) 551 116.5 9.6e-27
NP_001091074 (OMIM: 300289,300744,300745) X antige ( 69) 203 48.2 3e-06
NP_001091065 (OMIM: 300742,300743) X antigen famil ( 69) 203 48.2 3e-06
>>XP_016885237 (OMIM: 300742,300743) PREDICTED: X antige (148 aa)
initn: 806 init1: 806 opt: 806 Z-score: 867.8 bits: 166.7 E(85289): 1.3e-41
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MRCHAHGPSCLVTAITREEGGPRSGGAQAKLGCCWGYPSPRSTWNPDRRFWTPQTGPGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRCHAHGPSCLVTAITREEGGPRSGGAQAKLGCCWGYPSPRSTWNPDRRFWTPQTGPGEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCATWKVICK
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDM
70 80 90 100 110 120
130 140 150 160
pF1KE1 SCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
XP_016 EGDLQELHQSNTGDKSGFGFRRQGEDNT
130 140
>>XP_016885235 (OMIM: 300289,300744,300745) PREDICTED: X (148 aa)
initn: 806 init1: 806 opt: 806 Z-score: 867.8 bits: 166.7 E(85289): 1.3e-41
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MRCHAHGPSCLVTAITREEGGPRSGGAQAKLGCCWGYPSPRSTWNPDRRFWTPQTGPGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRCHAHGPSCLVTAITREEGGPRSGGAQAKLGCCWGYPSPRSTWNPDRRFWTPQTGPGEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCATWKVICK
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDM
70 80 90 100 110 120
130 140 150 160
pF1KE1 SCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
XP_016 EGDLQELHQSNTGDKSGFGFRRQGEDNT
130 140
>>XP_016885236 (OMIM: 300289,300744,300745) PREDICTED: X (146 aa)
initn: 680 init1: 665 opt: 677 Z-score: 731.1 bits: 141.4 E(85289): 5.5e-34
Smith-Waterman score: 677; 79.6% identity (81.8% similar) in 137 aa overlap (33-160:11-146)
10 20 30 40 50 60
pF1KE1 CHAHGPSCLVTAITREEGGPRSGGAQAKLGCCWG-YPS-PRSTWNPDRRFWTPQTGPGEG
: : .:: : .:. :: : : :
XP_016 MLLWCPPQCACSLGVFPSAPSPVWGT-RRSCEPATRVPEV
10 20 30
70 80 90 100 110
pF1KE1 -------RHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCA
:: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WILSPLLRHGGHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCA
40 50 60 70 80 90
120 130 140 150 160
pF1KE1 TWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
100 110 120 130 140
>>XP_016885238 (OMIM: 300742,300743) PREDICTED: X antige (146 aa)
initn: 680 init1: 665 opt: 677 Z-score: 731.1 bits: 141.4 E(85289): 5.5e-34
Smith-Waterman score: 677; 79.6% identity (81.8% similar) in 137 aa overlap (33-160:11-146)
10 20 30 40 50 60
pF1KE1 CHAHGPSCLVTAITREEGGPRSGGAQAKLGCCWG-YPS-PRSTWNPDRRFWTPQTGPGEG
: : .:: : .:. :: : : :
XP_016 MLLWCPPQCACSLGVFPSAPSPVWGT-RRSCEPATRVPEV
10 20 30
70 80 90 100 110
pF1KE1 -------RHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCA
:: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WILSPLLRHGGHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCA
40 50 60 70 80 90
120 130 140 150 160
pF1KE1 TWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
100 110 120 130 140
>>NP_001091073 (OMIM: 300289,300744,300745) X antigen fa (81 aa)
initn: 551 init1: 551 opt: 551 Z-score: 601.2 bits: 116.5 E(85289): 9.6e-27
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 81 aa overlap (80-160:1-81)
50 60 70 80 90 100
pF1KE1 FWTPQTGPGEGRHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLR
::::::::::::::::::::::::::::::
NP_001 MESPKKKNQQLKVGILHLGSRQKKIRIQLR
10 20 30
110 120 130 140 150 160
pF1KE1 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
40 50 60 70 80
>>NP_001091063 (OMIM: 300742,300743) X antigen family me (81 aa)
initn: 551 init1: 551 opt: 551 Z-score: 601.2 bits: 116.5 E(85289): 9.6e-27
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 81 aa overlap (80-160:1-81)
50 60 70 80 90 100
pF1KE1 FWTPQTGPGEGRHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLR
::::::::::::::::::::::::::::::
NP_001 MESPKKKNQQLKVGILHLGSRQKKIRIQLR
10 20 30
110 120 130 140 150 160
pF1KE1 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
40 50 60 70 80
>>NP_001091074 (OMIM: 300289,300744,300745) X antigen fa (69 aa)
initn: 203 init1: 203 opt: 203 Z-score: 233.3 bits: 48.2 E(85289): 3e-06
Smith-Waterman score: 203; 100.0% identity (100.0% similar) in 32 aa overlap (80-111:1-32)
50 60 70 80 90 100
pF1KE1 FWTPQTGPGEGRHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLR
::::::::::::::::::::::::::::::
NP_001 MESPKKKNQQLKVGILHLGSRQKKIRIQLR
10 20 30
110 120 130 140 150 160
pF1KE1 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
::
NP_001 SQVLGREMRDMEGDLQELHQSNTGDKSGFGFRRQGEDNT
40 50 60
>>NP_001091065 (OMIM: 300742,300743) X antigen family me (69 aa)
initn: 203 init1: 203 opt: 203 Z-score: 233.3 bits: 48.2 E(85289): 3e-06
Smith-Waterman score: 203; 100.0% identity (100.0% similar) in 32 aa overlap (80-111:1-32)
50 60 70 80 90 100
pF1KE1 FWTPQTGPGEGRHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLR
::::::::::::::::::::::::::::::
NP_001 MESPKKKNQQLKVGILHLGSRQKKIRIQLR
10 20 30
110 120 130 140 150 160
pF1KE1 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
::
NP_001 SQVLGREMRDMEGDLQELHQSNTGDKSGFGFRRQGEDNT
40 50 60
160 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:50:28 2016 done: Sun Nov 6 10:50:29 2016
Total Scan time: 5.570 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]