Result of FASTA (ccds) for
pFN21AE1111
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1111, 130 aa
1>>>pF1KE1111 130 - 130 aa - 130 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6395+/-0.00073; mu= 14.3327+/- 0.044
mean_var=57.5646+/-11.459, 0's: 0 Z-trim(108.7): 41 B-trim: 152 in 1/49
Lambda= 0.169043
statistics sampled from 10345 (10391) to 10345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.319), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 ( 130) 824 208.5 9.6e-55
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 ( 130) 824 208.5 9.6e-55
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 ( 130) 824 208.5 9.6e-55
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 ( 130) 824 208.5 9.6e-55
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 ( 130) 824 208.5 9.6e-55
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 ( 130) 820 207.5 1.9e-54
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 ( 130) 819 207.3 2.2e-54
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 ( 130) 819 207.3 2.2e-54
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 ( 130) 818 207.0 2.6e-54
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 ( 130) 817 206.8 3.1e-54
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 ( 130) 817 206.8 3.1e-54
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 ( 130) 814 206.0 5.2e-54
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 ( 128) 810 205.1 1e-53
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 ( 128) 805 203.8 2.4e-53
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 ( 129) 789 199.9 3.5e-52
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 ( 130) 782 198.2 1.2e-51
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 ( 131) 779 197.5 1.9e-51
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 ( 129) 772 195.8 6.3e-51
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 ( 143) 737 187.3 2.5e-48
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5 ( 369) 493 128.1 4.3e-30
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5 ( 371) 493 128.1 4.4e-30
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5 ( 372) 493 128.1 4.4e-30
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10 ( 372) 483 125.6 2.4e-29
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 ( 128) 455 118.5 1.2e-27
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 ( 128) 451 117.5 2.3e-27
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 ( 114) 409 107.2 2.5e-24
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 ( 102) 360 95.2 9.2e-21
CCDS35464.1 H2AFB3 gene_id:83740|Hs108|chrX ( 115) 299 80.4 3e-16
CCDS35461.1 H2AFB2 gene_id:474381|Hs108|chrX ( 115) 299 80.4 3e-16
CCDS35458.1 H2AFB1 gene_id:474382|Hs108|chrX ( 115) 290 78.2 1.4e-15
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7 ( 66) 237 65.1 7e-12
CCDS5498.1 H2AFV gene_id:94239|Hs108|chr7 ( 90) 224 62.0 8.1e-11
>>CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 (130 aa)
initn: 824 init1: 824 opt: 824 Z-score: 1096.3 bits: 208.5 E(32554): 9.6e-55
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 (130 aa)
initn: 824 init1: 824 opt: 824 Z-score: 1096.3 bits: 208.5 E(32554): 9.6e-55
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 (130 aa)
initn: 824 init1: 824 opt: 824 Z-score: 1096.3 bits: 208.5 E(32554): 9.6e-55
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 (130 aa)
initn: 824 init1: 824 opt: 824 Z-score: 1096.3 bits: 208.5 E(32554): 9.6e-55
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 (130 aa)
initn: 824 init1: 824 opt: 824 Z-score: 1096.3 bits: 208.5 E(32554): 9.6e-55
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 (130 aa)
initn: 820 init1: 820 opt: 820 Z-score: 1091.0 bits: 207.5 E(32554): 1.9e-54
Smith-Waterman score: 820; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 (130 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1089.7 bits: 207.3 E(32554): 2.2e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS93 TESHHKAKGK
130
>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 (130 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1089.7 bits: 207.3 E(32554): 2.2e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS30 TESHHKAKGK
130
>>CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1088.4 bits: 207.0 E(32554): 2.6e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 (130 aa)
initn: 817 init1: 817 opt: 817 Z-score: 1087.1 bits: 206.8 E(32554): 3.1e-54
Smith-Waterman score: 817; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
130 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:02:41 2016 done: Mon Nov 7 00:02:41 2016
Total Scan time: 1.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]