Result of FASTA (omim) for
pFN21AE1109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1109, 111 aa
1>>>pF1KE1109 111 - 111 aa - 111 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5905+/-0.000232; mu= 5.8319+/- 0.015
mean_var=110.0674+/-21.462, 0's: 0 Z-trim(125.2): 43 B-trim: 184 in 1/57
Lambda= 0.122249
statistics sampled from 48256 (48300) to 48256 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.874), E-opt: 0.2 (0.566), width: 16
Scan time: 5.220
The best scores are: opt bits E(85289)
NP_570133 (OMIM: 300416) X antigen family member 2 ( 111) 773 145.1 2.2e-35
XP_011529138 (OMIM: 300416) PREDICTED: X antigen f ( 111) 773 145.1 2.2e-35
NP_573440 (OMIM: 300740) X antigen family member 3 ( 111) 570 109.3 1.3e-24
XP_011529072 (OMIM: 300740) PREDICTED: X antigen f ( 111) 570 109.3 1.3e-24
XP_011529070 (OMIM: 300740) PREDICTED: X antigen f ( 111) 570 109.3 1.3e-24
XP_011529071 (OMIM: 300740) PREDICTED: X antigen f ( 111) 570 109.3 1.3e-24
NP_570132 (OMIM: 300740) X antigen family member 3 ( 111) 570 109.3 1.3e-24
NP_001091883 (OMIM: 300737) G antigen 10 [Homo sap ( 116) 331 67.1 6.8e-12
NP_036328 (OMIM: 300638) G antigen 2D [Homo sapien ( 116) 319 65.0 3e-11
NP_001120672 (OMIM: 300736) G antigen 2E [Homo sap ( 116) 319 65.0 3e-11
NP_001091877 (OMIM: 300735) G antigen 2D [Homo sap ( 116) 319 65.0 3e-11
NP_001035753 (OMIM: 300594) G antigen 1 [Homo sapi ( 117) 314 64.1 5.5e-11
NP_001091881 (OMIM: 300726) G antigen 2B/2C [Homo ( 116) 310 63.4 8.9e-11
NP_001463 (OMIM: 300595) G antigen 2B/2C [Homo sap ( 116) 310 63.4 8.9e-11
NP_001120684 (OMIM: 300720) G antigen 2A/2B [Homo ( 116) 306 62.7 1.4e-10
NP_001465 (OMIM: 300597) G antigen 4 [Homo sapiens ( 117) 304 62.4 1.9e-10
NP_001466 (OMIM: 300598) G antigen 5 [Homo sapiens ( 117) 302 62.0 2.4e-10
NP_001467 (OMIM: 300599) G antigen 6 [Homo sapiens ( 117) 301 61.8 2.7e-10
NP_001091880 (OMIM: 300732) G antigen 12H [Homo sa ( 117) 300 61.7 3e-10
NP_001091882 (OMIM: 300734) G antigen 13 [Homo sap ( 117) 299 61.5 3.4e-10
NP_001468 (OMIM: 300637) G antigen 12I [Homo sapie ( 117) 295 60.8 5.6e-10
NP_001120671 (OMIM: 300728) G antigen 12B/C/D/E [H ( 117) 295 60.8 5.6e-10
NP_001091879 (OMIM: 300731) G antigen 12G [Homo sa ( 117) 295 60.8 5.6e-10
NP_001091875 (OMIM: 300730) G antigen 12F [Homo sa ( 117) 295 60.8 5.6e-10
NP_001091888 (OMIM: 300729) G antigen 12B/C/D/E [H ( 117) 295 60.8 5.6e-10
NP_001091878 (OMIM: 300727) G antigen 12B/C/D/E [H ( 117) 295 60.8 5.6e-10
NP_066946 (OMIM: 300601) G antigen 12G [Homo sapie ( 117) 295 60.8 5.6e-10
NP_001091876 (OMIM: 300733) G antigen 12J [Homo sa ( 117) 294 60.6 6.3e-10
XP_011542198 (OMIM: 300594) PREDICTED: G antigen 1 ( 119) 288 59.6 1.3e-09
NP_001290542 (OMIM: 300739) P antigen family membe ( 113) 261 54.8 3.5e-08
NP_001017931 (OMIM: 300739) P antigen family membe ( 113) 261 54.8 3.5e-08
NP_001164723 (OMIM: 300739) P antigen family membe ( 113) 261 54.8 3.5e-08
XP_016884771 (OMIM: 300739) PREDICTED: P antigen f ( 113) 255 53.7 7.2e-08
NP_997222 (OMIM: 300738) P antigen family member 2 ( 111) 189 42.1 0.00023
XP_016884842 (OMIM: 300738) PREDICTED: P antigen f ( 111) 189 42.1 0.00023
NP_001305806 (OMIM: 300287) P antigen family membe ( 102) 178 40.1 0.00081
NP_008934 (OMIM: 300287) P antigen family member 4 ( 102) 178 40.1 0.00081
>>NP_570133 (OMIM: 300416) X antigen family member 2 [Ho (111 aa)
initn: 773 init1: 773 opt: 773 Z-score: 756.1 bits: 145.1 E(85289): 2.2e-35
Smith-Waterman score: 773; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
70 80 90 100 110
>>XP_011529138 (OMIM: 300416) PREDICTED: X antigen famil (111 aa)
initn: 773 init1: 773 opt: 773 Z-score: 756.1 bits: 145.1 E(85289): 2.2e-35
Smith-Waterman score: 773; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
70 80 90 100 110
>>NP_573440 (OMIM: 300740) X antigen family member 3 [Ho (111 aa)
initn: 570 init1: 570 opt: 570 Z-score: 562.6 bits: 109.3 E(85289): 1.3e-24
Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
: ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.::::::
NP_573 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::: :.::: : .: : .::::::.:.:::::.:. . ::
NP_573 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV
70 80 90 100 110
>>XP_011529072 (OMIM: 300740) PREDICTED: X antigen famil (111 aa)
initn: 570 init1: 570 opt: 570 Z-score: 562.6 bits: 109.3 E(85289): 1.3e-24
Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
: ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.::::::
XP_011 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::: :.::: : .: : .::::::.:.:::::.:. . ::
XP_011 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV
70 80 90 100 110
>>XP_011529070 (OMIM: 300740) PREDICTED: X antigen famil (111 aa)
initn: 570 init1: 570 opt: 570 Z-score: 562.6 bits: 109.3 E(85289): 1.3e-24
Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
: ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.::::::
XP_011 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::: :.::: : .: : .::::::.:.:::::.:. . ::
XP_011 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV
70 80 90 100 110
>>XP_011529071 (OMIM: 300740) PREDICTED: X antigen famil (111 aa)
initn: 570 init1: 570 opt: 570 Z-score: 562.6 bits: 109.3 E(85289): 1.3e-24
Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
: ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.::::::
XP_011 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::: :.::: : .: : .::::::.:.:::::.:. . ::
XP_011 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV
70 80 90 100 110
>>NP_570132 (OMIM: 300740) X antigen family member 3 [Ho (111 aa)
initn: 570 init1: 570 opt: 570 Z-score: 562.6 bits: 109.3 E(85289): 1.3e-24
Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
: ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.::::::
NP_570 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::: :.::: : .: : .::::::.:.:::::.:. . ::
NP_570 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV
70 80 90 100 110
>>NP_001091883 (OMIM: 300737) G antigen 10 [Homo sapiens (116 aa)
initn: 317 init1: 169 opt: 331 Z-score: 334.5 bits: 67.1 E(85289): 6.8e-12
Smith-Waterman score: 331; 49.1% identity (64.7% similar) in 116 aa overlap (1-110:1-115)
10 20 30 40 50
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP--TDE----EPKEEKPPTKSRNPTPDQKRED
::::::::::::::: ..:::.:: :: .:: :.: .: :. ..:. :. ::
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPMLPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
. ::. : : ::: :: . ::: : : : . ::. :. : :: :: .::
NP_001 E-GASAGQGPKPEADSQEQVHPKTGCECGDGPDGQEMGLPNPEEVKRPEEGEKQSQC
70 80 90 100 110
>>NP_036328 (OMIM: 300638) G antigen 2D [Homo sapiens] (116 aa)
initn: 317 init1: 164 opt: 319 Z-score: 323.1 bits: 65.0 E(85289): 3e-11
Smith-Waterman score: 319; 47.9% identity (65.0% similar) in 117 aa overlap (1-110:1-115)
10 20 30 40 50
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKRE
::::::::::::::: ..:::.:: : .: .:: :.: .: :. ..:. :. :
NP_036 MSWRGRSTYRPRPRRYVEPPEMIGPM-RPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:. ::. : : ::: :: . .:: :: : : . :. :. : :: :: .::
NP_036 DE-GASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
60 70 80 90 100 110
>>NP_001120672 (OMIM: 300736) G antigen 2E [Homo sapiens (116 aa)
initn: 317 init1: 164 opt: 319 Z-score: 323.1 bits: 65.0 E(85289): 3e-11
Smith-Waterman score: 319; 47.9% identity (65.0% similar) in 117 aa overlap (1-110:1-115)
10 20 30 40 50
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKRE
::::::::::::::: ..:::.:: : .: .:: :.: .: :. ..:. :. :
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPM-RPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:. ::. : : ::: :: . .:: :: : : . :. :. : :: :: .::
NP_001 DE-GASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
60 70 80 90 100 110
111 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:08:18 2016 done: Sun Nov 6 23:08:19 2016
Total Scan time: 5.220 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]