Result of FASTA (ccds) for
pFN21AE1109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1109, 111 aa
1>>>pF1KE1109 111 - 111 aa - 111 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3530+/-0.000535; mu= 7.4028+/- 0.033
mean_var=108.3097+/-20.930, 0's: 0 Z-trim(117.6): 23 B-trim: 0 in 0/54
Lambda= 0.123237
statistics sampled from 18372 (18396) to 18372 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.565), width: 16
Scan time: 1.790
The best scores are: opt bits E(32554)
CCDS59525.1 XAGE2 gene_id:9502|Hs108|chrX ( 111) 773 146.0 4.4e-36
CCDS14347.1 XAGE3 gene_id:170626|Hs108|chrX ( 111) 570 110.0 3.2e-25
CCDS14346.1 XAGE5 gene_id:170627|Hs108|chrX ( 108) 508 98.9 6.5e-22
CCDS78483.1 GAGE10 gene_id:102724473|Hs108|chrX ( 116) 331 67.5 2e-12
CCDS43950.1 GAGE1 gene_id:2543|Hs108|chrX ( 117) 314 64.5 1.7e-11
CCDS48114.1 GAGE2A gene_id:729447|Hs108|chrX ( 116) 306 63.0 4.5e-11
CCDS43948.1 GAGE12H gene_id:729442|Hs108|chrX ( 117) 300 62.0 9.4e-11
>>CCDS59525.1 XAGE2 gene_id:9502|Hs108|chrX (111 aa)
initn: 773 init1: 773 opt: 773 Z-score: 761.3 bits: 146.0 E(32554): 4.4e-36
Smith-Waterman score: 773; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
70 80 90 100 110
>>CCDS14347.1 XAGE3 gene_id:170626|Hs108|chrX (111 aa)
initn: 570 init1: 570 opt: 570 Z-score: 566.3 bits: 110.0 E(32554): 3.2e-25
Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
: ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.::::::
CCDS14 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:::::::::::: :.::: : .: : .::::::.:.:::::.:. . ::
CCDS14 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV
70 80 90 100 110
>>CCDS14346.1 XAGE5 gene_id:170627|Hs108|chrX (108 aa)
initn: 560 init1: 471 opt: 508 Z-score: 506.9 bits: 98.9 E(32554): 6.5e-22
Smith-Waterman score: 508; 67.6% identity (83.8% similar) in 111 aa overlap (1-111:1-108)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE
:::::: : :::: :. .:.: ::::. ::..:.:::.:.. :: :::::::::::
CCDS14 MSWRGR---RYRPRRCLRLAQLVGPMLEPSVPEPQQEEPPTESQDHTPGQKREDDQGAAE
10 20 30 40 50
70 80 90 100 110
pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
::::.:::::::: :.:::: : . ::.::::::.:.:::::.:::: :.
CCDS14 IQVPNLEADLQELSQSKTGDECGDSPDVQGKILPKSEQFKMPEGGEGKPQL
60 70 80 90 100
>>CCDS78483.1 GAGE10 gene_id:102724473|Hs108|chrX (116 aa)
initn: 317 init1: 169 opt: 331 Z-score: 336.4 bits: 67.5 E(32554): 2e-12
Smith-Waterman score: 331; 49.1% identity (64.7% similar) in 116 aa overlap (1-110:1-115)
10 20 30 40 50
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP--TDE----EPKEEKPPTKSRNPTPDQKRED
::::::::::::::: ..:::.:: :: .:: :.: .: :. ..:. :. ::
CCDS78 MSWRGRSTYRPRPRRYVEPPEMIGPMLPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
. ::. : : ::: :: . ::: : : : . ::. :. : :: :: .::
CCDS78 E-GASAGQGPKPEADSQEQVHPKTGCECGDGPDGQEMGLPNPEEVKRPEEGEKQSQC
70 80 90 100 110
>>CCDS43950.1 GAGE1 gene_id:2543|Hs108|chrX (117 aa)
initn: 248 init1: 167 opt: 314 Z-score: 320.0 bits: 64.5 E(32554): 1.7e-11
Smith-Waterman score: 314; 48.3% identity (64.4% similar) in 118 aa overlap (1-110:1-116)
10 20 30 40 50
pF1KE1 MSWRGRSTYR-PRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKR
::::::::: ::::: .::::.:: : .: .:: :.: .: :. ..:. :.
CCDS43 MSWRGRSTYYWPRPRRYVQPPEMIGPM-RPEQFSDEVEPATPEEGEPATQRQDPAAAQEG
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 EDDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
::. ::. : : ::: :: . .:: :: : : . :. :. : :: :::.::
CCDS43 EDE-GASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEGQSQC
60 70 80 90 100 110
>>CCDS48114.1 GAGE2A gene_id:729447|Hs108|chrX (116 aa)
initn: 306 init1: 164 opt: 306 Z-score: 312.3 bits: 63.0 E(32554): 4.5e-11
Smith-Waterman score: 306; 46.2% identity (64.1% similar) in 117 aa overlap (1-110:1-115)
10 20 30 40 50
pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKRE
::::::::::::::: ..:::.:: : .: .:: :.: .: :. ..:. :. .
CCDS48 MSWRGRSTYRPRPRRYVEPPEMIGPM-RPEQFSDEVEPATPEEGEPATQRQDPAAAQEGQ
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
:. ::. : : :: :: . .:: :: : : . :. :. : :: :: .::
CCDS48 DE-GASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
60 70 80 90 100 110
>>CCDS43948.1 GAGE12H gene_id:729442|Hs108|chrX (117 aa)
initn: 221 init1: 140 opt: 300 Z-score: 306.5 bits: 62.0 E(32554): 9.4e-11
Smith-Waterman score: 300; 47.5% identity (62.7% similar) in 118 aa overlap (1-110:1-116)
10 20 30 40 50
pF1KE1 MSWRGRSTYR-PRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKR
::::::::: ::::: .::::.:: : .: .:: :.: .: :. ..:. ::
CCDS43 MSWRGRSTYYWPRPRRYVQPPEMIGPM-RPEQFSDEVEPATPEEGEPATQCQDPAAAQKG
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 EDDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV
::. ::. : : :: :: . .:: :: : : . :. :. : :: :: .::
CCDS43 EDE-GASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
60 70 80 90 100 110
111 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:08:17 2016 done: Sun Nov 6 23:08:18 2016
Total Scan time: 1.790 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]