FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1108, 103 aa
  1>>>pF1KE1108 103 - 103 aa - 103 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9795+/-0.000587; mu= 7.4185+/- 0.036
 mean_var=82.0428+/-15.932, 0's: 0 Z-trim(113.6): 10  B-trim: 0 in 0/50
 Lambda= 0.141597
 statistics sampled from 14230 (14239) to 14230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.437), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS44006.1 SPANXB1 gene_id:728695|Hs108|chrX      ( 103)  668 144.7 9.7e-36
CCDS14674.1 SPANXA1 gene_id:30014|Hs108|chrX       (  97)  507 111.8 7.3e-26
CCDS44007.1 SPANXA2 gene_id:728712|Hs108|chrX      (  97)  507 111.8 7.3e-26
CCDS14673.1 SPANXC gene_id:64663|Hs108|chrX        (  97)  488 107.9 1.1e-24
CCDS14675.1 SPANXD gene_id:64648|Hs108|chrX        (  97)  477 105.7 5.1e-24


>>CCDS44006.1 SPANXB1 gene_id:728695|Hs108|chrX           (103 aa)
 initn: 668 init1: 668 opt: 668  Z-score: 755.2  bits: 144.7 E(32554): 9.7e-36
Smith-Waterman score: 668; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KE1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
               10        20        30        40        50        60

               70        80        90       100   
pF1KE1 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK
       :::::::::::::.:::::::::::::::::::::::::::::
CCDS44 YRRNVKRTSPEELLNDHARENRINPDQMEEEEFIEITTERPKK
               70        80        90       100   

>>CCDS14674.1 SPANXA1 gene_id:30014|Hs108|chrX            (97 aa)
 initn: 544 init1: 451 opt: 507  Z-score: 577.8  bits: 111.8 E(32554): 7.3e-26
Smith-Waterman score: 507; 78.6% identity (85.4% similar) in 103 aa overlap (1-103:1-97)

               10        20        30        40        50        60
pF1KE1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
       : .:::.  .::::::.::::::       ::::::::::::::::::::::::::::::
CCDS14 MDKQSSAGGVKRSVPCDSNEANEM------MPETPTGDSDPQPAPKKMKTSESSTILVVR
               10        20              30        40        50    

               70        80        90       100   
pF1KE1 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK
       :::: ::::::::.::::::::::: :::::::.:: .: : :
CCDS14 YRRNFKRTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
           60        70        80        90       

>>CCDS44007.1 SPANXA2 gene_id:728712|Hs108|chrX           (97 aa)
 initn: 544 init1: 451 opt: 507  Z-score: 577.8  bits: 111.8 E(32554): 7.3e-26
Smith-Waterman score: 507; 78.6% identity (85.4% similar) in 103 aa overlap (1-103:1-97)

               10        20        30        40        50        60
pF1KE1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
       : .:::.  .::::::.::::::       ::::::::::::::::::::::::::::::
CCDS44 MDKQSSAGGVKRSVPCDSNEANEM------MPETPTGDSDPQPAPKKMKTSESSTILVVR
               10        20              30        40        50    

               70        80        90       100   
pF1KE1 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK
       :::: ::::::::.::::::::::: :::::::.:: .: : :
CCDS44 YRRNFKRTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
           60        70        80        90       

>>CCDS14673.1 SPANXC gene_id:64663|Hs108|chrX             (97 aa)
 initn: 530 init1: 432 opt: 488  Z-score: 556.8  bits: 107.9 E(32554): 1.1e-24
Smith-Waterman score: 488; 76.7% identity (84.5% similar) in 103 aa overlap (1-103:1-97)

               10        20        30        40        50        60
pF1KE1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
       : .:::.  .::::::.::::::       :::: .: :::::::::.::::::::::::
CCDS14 MDKQSSAGGVKRSVPCDSNEANEM------MPETSSGYSDPQPAPKKLKTSESSTILVVR
               10        20              30        40        50    

               70        80        90       100   
pF1KE1 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK
       ::::::::::::::::::::::::: :::::::.:: .: : :
CCDS14 YRRNVKRTSPEELVNDHARENRINPLQMEEEEFMEIMVEIPAK
           60        70        80        90       

>>CCDS14675.1 SPANXD gene_id:64648|Hs108|chrX             (97 aa)
 initn: 519 init1: 421 opt: 477  Z-score: 544.7  bits: 105.7 E(32554): 5.1e-24
Smith-Waterman score: 477; 74.8% identity (83.5% similar) in 103 aa overlap (1-103:1-97)

               10        20        30        40        50        60
pF1KE1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
       : .:::.  .::::::.::::::       :::: .: :::::::::.::::::::::::
CCDS14 MDKQSSAGGVKRSVPCDSNEANEM------MPETSSGYSDPQPAPKKLKTSESSTILVVR
               10        20              30        40        50    

               70        80        90       100   
pF1KE1 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK
       :::: ::::::::::::::.::::: :::::::.:: .: : :
CCDS14 YRRNFKRTSPEELVNDHARKNRINPLQMEEEEFMEIMVEIPAK
           60        70        80        90       




103 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:19:00 2016 done: Sun Nov  6 22:19:01 2016
 Total Scan time:  1.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]