FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1106, 95 aa
  1>>>pF1KE1106 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8177+/-0.000304; mu= 11.0341+/- 0.019
 mean_var=48.7662+/- 9.782, 0's: 0 Z-trim(116.0): 10  B-trim: 1015 in 2/47
 Lambda= 0.183660
 statistics sampled from 26874 (26884) to 26874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.315), width:  16
 Scan time:  4.310

The best scores are:                                      opt bits E(85289)
NP_663626 (OMIM: 610176) secretoglobin family 1C m (  95)  607 167.7 2.5e-42
XP_005252861 (OMIM: 610176) PREDICTED: secretoglob ( 138)  607 167.8 3.4e-42
NP_006542 (OMIM: 615061) secretoglobin family 1D m (  90)  127 40.5 0.00046
NP_003348 (OMIM: 192020) uteroglobin precursor [Ho (  91)  114 37.1   0.005


>>NP_663626 (OMIM: 610176) secretoglobin family 1C membe  (95 aa)
 initn: 607 init1: 607 opt: 607  Z-score: 881.0  bits: 167.7 E(85289): 2.5e-42
Smith-Waterman score: 607; 98.9% identity (98.9% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
               10        20        30        40        50        60

               70        80        90     
pF1KE1 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
       ::::::::: :::::::::::::::::::::::::
NP_663 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA
               70        80        90     

>>XP_005252861 (OMIM: 610176) PREDICTED: secretoglobin f  (138 aa)
 initn: 607 init1: 607 opt: 607  Z-score: 878.4  bits: 167.8 E(85289): 3.4e-42
Smith-Waterman score: 607; 98.9% identity (98.9% similar) in 95 aa overlap (1-95:44-138)

                                             10        20        30
pF1KE1                               MKGSRALLLVALTLFCICRMATGEDNDEFF
                                     ::::::::::::::::::::::::::::::
XP_005 ANPGCNQERCCPVRHKIPGFWLEAAPETAGMKGSRALLLVALTLFCICRMATGEDNDEFF
            20        30        40        50        60        70   

               40        50        60        70        80        90
pF1KE1 MDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCRDGLQPMHKAELVKLLVQVLG
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_005 MDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCIDGLQPMHKAELVKLLVQVLG
            80        90       100       110       120       130   

            
pF1KE1 SQDGA
       :::::
XP_005 SQDGA
            

>>NP_006542 (OMIM: 615061) secretoglobin family 1D membe  (90 aa)
 initn:  69 init1:  51 opt: 127  Z-score: 194.0  bits: 40.5 E(85289): 0.00046
Smith-Waterman score: 127; 30.3% identity (68.5% similar) in 89 aa overlap (1-89:1-85)

               10        20        30        40        50        60
pF1KE1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
       :: :  ::::.:.: : : .:..:    .  ..:. .... :  :.. .:.:...  .: 
NP_006 MKLSVCLLLVTLAL-C-CYQANAEFCPALVSELLDFFFISEP--LFKLSLAKFDAPPEAV
               10          20        30        40          50      

               70        80        90     
pF1KE1 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
       ::   .: : : .. .... ....::..:      
NP_006 AAKLGVKRCTDQMSLQKRSLIAEVLVKILKKCSV 
         60        70        80        90 

>>NP_003348 (OMIM: 192020) uteroglobin precursor [Homo s  (91 aa)
 initn: 128 init1:  66 opt: 114  Z-score: 175.3  bits: 37.1 E(85289): 0.005
Smith-Waterman score: 114; 30.8% identity (60.4% similar) in 91 aa overlap (1-91:1-87)

               10        20        30        40        50        60
pF1KE1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
       :: . .: ::.:.: : :  :..:    : .  ..:::. ::   ::...  .. ..: .
NP_003 MKLAVTLTLVTLAL-C-CSSASAEICPSF-QRVIETLLMDTPSS-YEAAMELFSPDQDMR
               10          20         30        40         50      

               70        80        90     
pF1KE1 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
        : ..::.  : :    .  ..::. ..  :    
NP_003 EAGAQLKKLVDTLPQKPRESIIKLMEKIAQSSLCN
         60        70        80        90 




95 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:39:07 2016 done: Mon Nov  7 03:39:08 2016
 Total Scan time:  4.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]