FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1106, 95 aa
  1>>>pF1KE1106 95 - 95 aa - 95 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7763+/-0.000633; mu= 11.2048+/- 0.038
 mean_var=49.8210+/- 9.900, 0's: 0 Z-trim(109.3): 6  B-trim: 234 in 1/49
 Lambda= 0.181705
 statistics sampled from 10797 (10803) to 10797 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.332), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS73933.1 SCGB1C2 gene_id:653486|Hs108|chr17     (  95)  618 168.9 4.1e-43
CCDS41581.1 SCGB1C1 gene_id:147199|Hs108|chr11     (  95)  607 166.0   3e-42


>>CCDS73933.1 SCGB1C2 gene_id:653486|Hs108|chr17          (95 aa)
 initn: 618 init1: 618 opt: 618  Z-score: 887.5  bits: 168.9 E(32554): 4.1e-43
Smith-Waterman score: 618; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
               10        20        30        40        50        60

               70        80        90     
pF1KE1 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
       :::::::::::::::::::::::::::::::::::
CCDS73 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
               70        80        90     

>>CCDS41581.1 SCGB1C1 gene_id:147199|Hs108|chr11          (95 aa)
 initn: 607 init1: 607 opt: 607  Z-score: 871.9  bits: 166.0 E(32554): 3e-42
Smith-Waterman score: 607; 98.9% identity (98.9% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
               10        20        30        40        50        60

               70        80        90     
pF1KE1 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
       ::::::::: :::::::::::::::::::::::::
CCDS41 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA
               70        80        90     




95 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:39:07 2016 done: Mon Nov  7 03:39:07 2016
 Total Scan time:  1.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]