FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1087, 1239 aa
  1>>>pF1KE1087 1239 - 1239 aa - 1239 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2744+/-0.000911; mu= 14.0626+/- 0.055
 mean_var=143.3903+/-28.297, 0's: 0 Z-trim(110.6): 42  B-trim: 54 in 1/49
 Lambda= 0.107106
 statistics sampled from 11713 (11737) to 11713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.361), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(32554)
CCDS10350.1 POLG gene_id:5428|Hs108|chr15          (1239) 8568 1336.6       0


>>CCDS10350.1 POLG gene_id:5428|Hs108|chr15               (1239 aa)
 initn: 8568 init1: 8568 opt: 8568  Z-score: 7158.1  bits: 1336.6 E(32554):    0
Smith-Waterman score: 8568; 100.0% identity (100.0% similar) in 1239 aa overlap (1-1239:1-1239)

               10        20        30        40        50        60
pF1KE1 MSRLLWRKVAGATVGPGPVPAPGRWVSSSVPASDPSDGQRRRQQQQQQQQQQQQQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRLLWRKVAGATVGPGPVPAPGRWVSSSVPASDPSDGQRRRQQQQQQQQQQQQQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VLSSEGGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLSSEGGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQAQLPPKPPAWAWAEGWTRYGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQAQLPPKPPAWAWAEGWTRYGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EGEAVPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGEAVPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 ISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 RLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 PVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 EDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 QDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPGPSLLSLQMRVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPGPSLLSLQMRVTP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 KLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHC
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 LEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 ARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSCNVGSPFAKDFLPKMEDGTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSCNVGSPFAKDFLPKMEDGTLQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 AGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE1 LPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE1 VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE1 FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE1 SLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCIS
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE1 RALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYL
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE1 VREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTP
             1150      1160      1170      1180      1190      1200

             1210      1220      1230         
pF1KE1 SNPTGMERRYGIPQGEALDIYQIIELTKGSLEKRSQPGP
       :::::::::::::::::::::::::::::::::::::::
CCDS10 SNPTGMERRYGIPQGEALDIYQIIELTKGSLEKRSQPGP
             1210      1220      1230         




1239 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:15:46 2016 done: Sun Nov  6 20:15:47 2016
 Total Scan time:  5.500 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]