FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1008, 204 aa
  1>>>pF1KE1008 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0078+/-0.000895; mu= -6.9139+/- 0.054
 mean_var=434.4559+/-87.963, 0's: 0 Z-trim(119.0): 3  B-trim: 215 in 1/54
 Lambda= 0.061532
 statistics sampled from 20165 (20168) to 20165 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.62), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS32745.1 MXRA7 gene_id:439921|Hs108|chr17       ( 204) 1373 134.2 5.5e-32
CCDS32746.1 MXRA7 gene_id:439921|Hs108|chr17       ( 177) 1141 113.5   8e-26
CCDS45786.1 MXRA7 gene_id:439921|Hs108|chr17       ( 170) 1138 113.2 9.3e-26


>>CCDS32745.1 MXRA7 gene_id:439921|Hs108|chr17            (204 aa)
 initn: 1373 init1: 1373 opt: 1373  Z-score: 687.7  bits: 134.2 E(32554): 5.5e-32
Smith-Waterman score: 1373; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE1 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM
              130       140       150       160       170       180

              190       200    
pF1KE1 KDNKETFGEMSDGDVQEQLRLYDM
       ::::::::::::::::::::::::
CCDS32 KDNKETFGEMSDGDVQEQLRLYDM
              190       200    

>>CCDS32746.1 MXRA7 gene_id:439921|Hs108|chr17            (177 aa)
 initn: 1343 init1: 1141 opt: 1141  Z-score: 577.1  bits: 113.5 E(32554): 8e-26
Smith-Waterman score: 1141; 98.8% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE1 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM
       :::::::::::::::::::::::::::::::::::::::::::::::..           
CCDS32 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRIELTSDLTSL   
              130       140       150       160       170          

              190       200    
pF1KE1 KDNKETFGEMSDGDVQEQLRLYDM

>>CCDS45786.1 MXRA7 gene_id:439921|Hs108|chr17            (170 aa)
 initn: 1340 init1: 1138 opt: 1138  Z-score: 575.9  bits: 113.2 E(32554): 9.3e-26
Smith-Waterman score: 1138; 98.2% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KE1 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM
       :::::::::::::::::::::::::::::::::::::::::::::::...          
CCDS45 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRTEE          
              130       140       150       160       170          

              190       200    
pF1KE1 KDNKETFGEMSDGDVQEQLRLYDM




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:13:14 2016 done: Sun Nov  6 22:13:15 2016
 Total Scan time:  2.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]