FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0997, 175 aa
  1>>>pF1KE0997 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2656+/-0.000656; mu= 12.8013+/- 0.040
 mean_var=63.6419+/-12.814, 0's: 0 Z-trim(110.4): 15  B-trim: 0 in 0/49
 Lambda= 0.160769
 statistics sampled from 11570 (11580) to 11570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.356), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3        ( 175) 1241 295.8 9.1e-81
CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3         ( 406) 1241 296.0 1.8e-80
CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2        ( 529)  735 178.7 4.9e-45
CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2       ( 466)  388 98.2 7.5e-21


>>CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3             (175 aa)
 initn: 1241 init1: 1241 opt: 1241  Z-score: 1563.5  bits: 295.8 E(32554): 9.1e-81
Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE0 MNSQLVTTEKRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNSQLVTTEKRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTD
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE0 VCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC
              130       140       150       160       170     

>>CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3              (406 aa)
 initn: 1241 init1: 1241 opt: 1241  Z-score: 1558.0  bits: 296.0 E(32554): 1.8e-80
Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:232-406)

                                             10        20        30
pF1KE0                               MNSQLVTTEKRFLKDSLYNEGILIVWDPSV
                                     ::::::::::::::::::::::::::::::
CCDS32 IDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSLYNEGILIVWDPSV
             210       220       230       240       250       260 

               40        50        60        70        80        90
pF1KE0 YHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPP
             270       280       290       300       310       320 

              100       110       120       130       140       150
pF1KE0 SSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKH
             330       340       350       360       370       380 

              160       170     
pF1KE0 LNQGTDEDIYLLGKATLPGFRTIHC
       :::::::::::::::::::::::::
CCDS32 LNQGTDEDIYLLGKATLPGFRTIHC
             390       400      

>>CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2             (529 aa)
 initn: 722 init1: 722 opt: 735  Z-score: 922.0  bits: 178.7 E(32554): 4.9e-45
Smith-Waterman score: 735; 52.8% identity (86.9% similar) in 176 aa overlap (1-175:344-519)

                                             10         20         
pF1KE0                               MNSQLVTTEKR-FLKDSLYNEGILIVWDPS
                                     .:::..:. .. :. .:::.. ::..:::.
CCDS20 IDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSSLYKDVILVAWDPA
           320       330       340       350       360       370   

      30        40        50        60        70        80         
pF1KE0 VYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNP
        : ...  ::..::::.:. :  .:. .::::::::.:.. :.::::.:: . :.:::::
CCDS20 PYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDIIQENTKEKIQPNP
           380       390       400       410       420       430   

      90       100       110       120       130       140         
pF1KE0 PSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVK
       ::::..::.:::..: .: .::..:: :.:..:.:.. ..:.:::.:::::::::: ::.
CCDS20 PSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELYYDAACTLGAYHPLLYEKLLVQ
           440       450       460       470       480       490   

     150       160       170               
pF1KE0 HLNQGTDEDIYLLGKATLPGFRTIHC          
       .::.::. :..  ::..::::...::          
CCDS20 RLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS
           500       510       520         

>>CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2            (466 aa)
 initn: 387 init1: 363 opt: 388  Z-score: 487.8  bits: 98.2 E(32554): 7.5e-21
Smith-Waterman score: 388; 50.0% identity (84.0% similar) in 100 aa overlap (1-99:344-443)

                                             10         20         
pF1KE0                               MNSQLVTTEKR-FLKDSLYNEGILIVWDPS
                                     .:::..:. .. :. .:::.. ::..:::.
CCDS46 IDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSSLYKDVILVAWDPA
           320       330       340       350       360       370   

      30        40        50        60        70        80         
pF1KE0 VYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNP
        : ...  ::..::::.:. :  .:. .::::::::.:.. :.::::.:: . :.:::::
CCDS46 PYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDIIQENTKEKIQPNP
           380       390       400       410       420       430   

      90       100       110       120       130       140         
pF1KE0 PSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVK
       ::::..: ..                                                  
CCDS46 PSSGFIGSFVKIGHIRACSEPRSRDCTPAWTTE                           
           440       450       460                                 




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:01:34 2016 done: Mon Nov  7 16:01:34 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]