Result of FASTA (ccds) for
pFN21AE0917
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0917, 288 aa
1>>>pF1KE0917 288 - 288 aa - 288 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3432+/-0.000975; mu= 8.0726+/- 0.059
mean_var=242.3991+/-50.166, 0's: 0 Z-trim(111.6): 183 B-trim: 0 in 0/54
Lambda= 0.082378
statistics sampled from 12331 (12535) to 12331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.385), width: 16
Scan time: 2.580
The best scores are: opt bits E(32554)
CCDS33905.1 TRA2B gene_id:6434|Hs108|chr3 ( 288) 1972 247.0 1.2e-65
CCDS58872.1 TRA2B gene_id:6434|Hs108|chr3 ( 188) 1319 169.2 2.1e-42
CCDS5383.1 TRA2A gene_id:29896|Hs108|chr7 ( 282) 1163 150.9 1e-36
CCDS64609.1 TRA2A gene_id:29896|Hs108|chr7 ( 181) 838 112.0 3.3e-25
CCDS75569.1 TRA2A gene_id:29896|Hs108|chr7 ( 180) 819 109.7 1.6e-24
>>CCDS33905.1 TRA2B gene_id:6434|Hs108|chr3 (288 aa)
initn: 1972 init1: 1972 opt: 1972 Z-score: 1292.2 bits: 247.0 E(32554): 1.2e-65
Smith-Waterman score: 1972; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KE0 MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY
190 200 210 220 230 240
250 260 270 280
pF1KE0 RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
250 260 270 280
>>CCDS58872.1 TRA2B gene_id:6434|Hs108|chr3 (188 aa)
initn: 1319 init1: 1319 opt: 1319 Z-score: 874.7 bits: 169.2 E(32554): 2.1e-42
Smith-Waterman score: 1319; 100.0% identity (100.0% similar) in 188 aa overlap (101-288:1-188)
80 90 100 110 120 130
pF1KE0 SRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTT
::::::::::::::::::::::::::::::
CCDS58 MSTRRRHVGNRANPDPNCCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW
100 110 120 130 140 150
260 270 280
pF1KE0 RAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
::::::::::::::::::::::::::::::::::::::
CCDS58 RAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
160 170 180
>>CCDS5383.1 TRA2A gene_id:29896|Hs108|chr7 (282 aa)
initn: 986 init1: 800 opt: 1163 Z-score: 772.6 bits: 150.9 E(32554): 1e-36
Smith-Waterman score: 1189; 65.2% identity (78.7% similar) in 305 aa overlap (1-288:1-282)
10 20 30 40 50
pF1KE0 MSDSGEQNYGERESRSASRSGSAHGSG-KSARHTPARSRSKEDSRRSRSKSRSRSESRSR
::: :.:. ::::: :.: .. . :: .. .:: :. :..:.:.:::::.::::
CCDS53 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRV-SKHSESHSRSRSKSRSR
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 SRRSSRRHYTRSRSRSRSHRR-SRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNC
::: :.:.::::::.:.:::: ::::::. .::::.:.::::::.::::.:.:::::::
CCDS53 SRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER
:::::::::::::::::::::.:::.. :..::::.. ::::::::::: .::.::: ::
CCDS53 CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 ANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYD
::::::::::::::.::::: :::::::::::::. :..:::: :::
CCDS53 ANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYD
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY
:::::::: . :. :: :::::::::::: ::::::::::
CCDS53 RGYDRGYDRYEDYD--YR------------------YRRRSPSPYYSR--YRSRSRSRSY
240 250 260 270
pF1KE0 SPRRY
:::::
CCDS53 SPRRY
280
>>CCDS64609.1 TRA2A gene_id:29896|Hs108|chr7 (181 aa)
initn: 871 init1: 658 opt: 838 Z-score: 566.0 bits: 112.0 E(32554): 3.3e-25
Smith-Waterman score: 864; 68.5% identity (77.3% similar) in 203 aa overlap (101-288:1-181)
80 90 100 110 120 130
pF1KE0 SRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTT
::.::::.:.::::::: ::::::::::::
CCDS64 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
:::::::::.:::.. :..::::.. ::::::::::: .::.::: ::::::::::::::
CCDS64 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230
pF1KE0 VDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYDRGYDRGYDDRDY
::.::::: :::::::::::::. :..:::: ::::::::::: .
CCDS64 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
240 250 260 270 280
pF1KE0 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
: .:: :::::::::::: :::::::::::::::
CCDS64 Y--DYR------------------YRRRSPSPYYSR--YRSRSRSRSYSPRRY
160 170 180
>>CCDS75569.1 TRA2A gene_id:29896|Hs108|chr7 (180 aa)
initn: 822 init1: 661 opt: 819 Z-score: 553.8 bits: 109.7 E(32554): 1.6e-24
Smith-Waterman score: 848; 67.0% identity (75.9% similar) in 203 aa overlap (101-288:1-180)
80 90 100 110 120 130
pF1KE0 SRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTT
::.::::.:.::::::: ::::::::::::
CCDS75 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
:::::::::.:::.. :..::::.. ::::::::::: .::.::: ::::::::::::::
CCDS75 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230
pF1KE0 VDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYDRGYDRGYDDRDY
::.::::: :::::::::::::. :..:::: ::::::::::: .
CCDS75 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
240 250 260 270 280
pF1KE0 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
:. :: ::::::::: :::::::::::::::
CCDS75 YDYRYR---------------------RSPSPYYSR--YRSRSRSRSYSPRRY
160 170 180
288 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:39:29 2016 done: Sun Nov 6 23:39:30 2016
Total Scan time: 2.580 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]