FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0905, 177 aa
  1>>>pF1KE0905 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1418+/-0.000699; mu= 10.4870+/- 0.043
 mean_var=102.2551+/-20.139, 0's: 0 Z-trim(113.1): 11  B-trim: 0 in 0/52
 Lambda= 0.126833
 statistics sampled from 13767 (13770) to 13767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.423), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS44853.1 PTHLH gene_id:5744|Hs108|chr12         ( 177) 1167 222.8 8.6e-59
CCDS8715.1 PTHLH gene_id:5744|Hs108|chr12          ( 175) 1150 219.7 7.4e-58


>>CCDS44853.1 PTHLH gene_id:5744|Hs108|chr12              (177 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1169.0  bits: 222.8 E(32554): 8.6e-59
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
              130       140       150       160       170       

>>CCDS8715.1 PTHLH gene_id:5744|Hs108|chr12               (175 aa)
 initn: 1150 init1: 1150 opt: 1150  Z-score: 1152.2  bits: 219.7 E(32554): 7.4e-58
Smith-Waterman score: 1150; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS87 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR  
              130       140       150       160       170       




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:21:14 2016 done: Sun Nov  6 21:21:14 2016
 Total Scan time:  1.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]