Result of FASTA (ccds) for
pFN21AE0897
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0897, 255 aa
1>>>pF1KE0897 255 - 255 aa - 255 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0281+/-0.00103; mu= 6.6545+/- 0.062
mean_var=107.6060+/-20.823, 0's: 0 Z-trim(106.5): 40 B-trim: 8 in 1/51
Lambda= 0.123639
statistics sampled from 9013 (9044) to 9013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.278), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS1341.1 STX6 gene_id:10228|Hs108|chr1 ( 255) 1622 299.9 1.1e-81
CCDS32922.1 STX10 gene_id:8677|Hs108|chr19 ( 249) 1000 188.9 2.8e-48
CCDS65738.1 STX6 gene_id:10228|Hs108|chr1 ( 154) 970 183.5 7.6e-47
CCDS62569.1 STX10 gene_id:8677|Hs108|chr19 ( 246) 879 167.3 8.7e-42
CCDS62570.1 STX10 gene_id:8677|Hs108|chr19 ( 220) 744 143.2 1.4e-34
CCDS62571.1 STX10 gene_id:8677|Hs108|chr19 ( 200) 477 95.6 2.8e-20
>>CCDS1341.1 STX6 gene_id:10228|Hs108|chr1 (255 aa)
initn: 1622 init1: 1622 opt: 1622 Z-score: 1579.7 bits: 299.9 E(32554): 1.1e-81
Smith-Waterman score: 1622; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)
10 20 30 40 50 60
pF1KE0 MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAI
190 200 210 220 230 240
250
pF1KE0 LFAVLLVVLILFLVL
:::::::::::::::
CCDS13 LFAVLLVVLILFLVL
250
>>CCDS32922.1 STX10 gene_id:8677|Hs108|chr19 (249 aa)
initn: 1042 init1: 551 opt: 1000 Z-score: 980.2 bits: 188.9 E(32554): 2.8e-48
Smith-Waterman score: 1000; 61.2% identity (84.7% similar) in 255 aa overlap (1-255:1-249)
10 20 30 40 50 60
pF1KE0 MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWD
::.:::::::.::::::::::.::.::: ::::. ... :::.:::::::::.:::::::
CCDS32 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNR
::::.:::.:::::: ::.: : .:. ::.:. :..:..:::.: . .. :. ::.::
CCDS32 LEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVSPTAVAFLERNNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSI
. : : ..:. . .: :: :.:..:::::: ::::...::.:::.:::::
CCDS32 EILAGKPAAQK---SPSDL---LDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSI
130 140 150 160 170
190 200 210 220 230 240
pF1KE0 GVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAI
:::.:: :.: ::.::..::. :..:.. ::::.:.:..:::::::::::::::::::.
CCDS32 QVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRKLAKVSHMTSDRRQWCAIAV
180 190 200 210 220 230
250
pF1KE0 LFAVLLVVLILFLVL
: .:::.::::.. :
CCDS32 LVGVLLLVLILLFSL
240
>>CCDS65738.1 STX6 gene_id:10228|Hs108|chr1 (154 aa)
initn: 970 init1: 970 opt: 970 Z-score: 954.5 bits: 183.5 E(32554): 7.6e-47
Smith-Waterman score: 970; 100.0% identity (100.0% similar) in 154 aa overlap (102-255:1-154)
80 90 100 110 120 130
pF1KE0 EANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNRQALLGDSGSQN
::::::::::::::::::::::::::::::
CCDS65 MKDQMSTSSVQALAERKNRQALLGDSGSQN
10 20 30
140 150 160 170 180 190
pF1KE0 WSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 WSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIG
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 GELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAILFAVLLVVLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAILFAVLLVVLIL
100 110 120 130 140 150
pF1KE0 FLVL
::::
CCDS65 FLVL
>>CCDS62569.1 STX10 gene_id:8677|Hs108|chr19 (246 aa)
initn: 891 init1: 549 opt: 879 Z-score: 863.6 bits: 167.3 E(32554): 8.7e-42
Smith-Waterman score: 879; 60.0% identity (83.9% similar) in 230 aa overlap (1-230:1-224)
10 20 30 40 50 60
pF1KE0 MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWD
::.:::::::.::::::::::.::.::: ::::. ... :::.:::::::::.:::::::
CCDS62 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNR
::::.:::.:::::: ::.: : .:. ::.:. :..:..:::.: . .. :. ::.::
CCDS62 LEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVSPTAVAFLERNNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSI
. : : ..:. . .: :: :.:..:::::: ::::...::.:::.:::::
CCDS62 EILAGKPAAQK---SPSDL---LDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSI
130 140 150 160 170
190 200 210 220 230 240
pF1KE0 GVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAI
:::.:: :.: ::.::..::. :..:.. ::::.:.:..::::::::::
CCDS62 QVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRKLAKVSHMTSGESPQGRGQS
180 190 200 210 220 230
250
pF1KE0 LFAVLLVVLILFLVL
CCDS62 WWGQVVGGTLSP
240
>>CCDS62570.1 STX10 gene_id:8677|Hs108|chr19 (220 aa)
initn: 756 init1: 549 opt: 744 Z-score: 734.3 bits: 143.2 E(32554): 1.4e-34
Smith-Waterman score: 744; 59.2% identity (81.6% similar) in 201 aa overlap (1-201:1-195)
10 20 30 40 50 60
pF1KE0 MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWD
::.:::::::.::::::::::.::.::: ::::. ... :::.:::::::::.:::::::
CCDS62 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNR
::::.:::.:::::: ::.: : .:. ::.:. :..:..:::.: . .. :. ::.::
CCDS62 LEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVSPTAVAFLERNNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSI
. : : ..:. . .: :: :.:..:::::: ::::...::.:::.:::::
CCDS62 EILAGKPAAQK---SPSDL---LDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSI
130 140 150 160 170
190 200 210 220 230 240
pF1KE0 GVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAI
:::.:: :.: ::.::: .
CCDS62 QVLKHMSGRVGEELDEQACWMPSPKRWTTPSPAWTGSSGSWPKYPT
180 190 200 210 220
>>CCDS62571.1 STX10 gene_id:8677|Hs108|chr19 (200 aa)
initn: 907 init1: 477 opt: 477 Z-score: 477.5 bits: 95.6 E(32554): 2.8e-20
Smith-Waterman score: 775; 53.3% identity (72.5% similar) in 255 aa overlap (1-255:1-200)
10 20 30 40 50 60
pF1KE0 MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWD
::.:::::::.::::::::::.::.::: ::::. ... :::.:::::::::.:::::::
CCDS62 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNR
::::.:::.:::::: : :.. .. .: ...:.:.:
CCDS62 LEDLEETIGIVEANPGK---PAAQ---------------KSPSDLLDASAVSA-------
70 80 90
130 140 150 160 170 180
pF1KE0 QALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSI
.:..:::::: ::::...::.:::.:::::
CCDS62 ------------------------------TSRYIEEQQATQQLIMDEQDQQLEMVSGSI
100 110 120
190 200 210 220 230 240
pF1KE0 GVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAI
:::.:: :.: ::.::..::. :..:.. ::::.:.:..:::::::::::::::::::.
CCDS62 QVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRKLAKVSHMTSDRRQWCAIAV
130 140 150 160 170 180
250
pF1KE0 LFAVLLVVLILFLVL
: .:::.::::.. :
CCDS62 LVGVLLLVLILLFSL
190 200
255 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:00:18 2016 done: Mon Nov 7 02:00:19 2016
Total Scan time: 1.850 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]