FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0811, 375 aa
  1>>>pF1KE0811 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3675+/-0.000676; mu= 17.8284+/- 0.041
 mean_var=148.4796+/-47.558, 0's: 0 Z-trim(112.8): 86  B-trim: 1593 in 2/47
 Lambda= 0.105255
 statistics sampled from 13309 (13524) to 13309 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.415), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS2915.1 GPR27 gene_id:2850|Hs108|chr3           ( 375) 2555 399.6 2.3e-111
CCDS14349.1 GPR173 gene_id:54328|Hs108|chrX        ( 373) 1379 221.1 1.3e-57
CCDS5758.1 GPR85 gene_id:54329|Hs108|chr7          ( 370) 1322 212.4 5.2e-55


>>CCDS2915.1 GPR27 gene_id:2850|Hs108|chr3                (375 aa)
 initn: 2555 init1: 2555 opt: 2555  Z-score: 2112.9  bits: 399.6 E(32554): 2.3e-111
Smith-Waterman score: 2555; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KE0 MANASEPGGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MANASEPGGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 CLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDDEDAPCALEQRPDGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 YLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDDEDAPCALEQRPDGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 PGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 NWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 NWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 VVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPR
              310       320       330       340       350       360

              370     
pF1KE0 TTQATHPCDLKGIGL
       :::::::::::::::
CCDS29 TTQATHPCDLKGIGL
              370     

>>CCDS14349.1 GPR173 gene_id:54328|Hs108|chrX             (373 aa)
 initn: 970 init1: 398 opt: 1379  Z-score: 1147.8  bits: 221.1 E(32554): 1.3e-57
Smith-Waterman score: 1379; 54.7% identity (83.4% similar) in 362 aa overlap (1-355:1-357)

                   10        20        30        40        50      
pF1KE0 MANAS-EP---GGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYL
       :::.. ::   .:. .  .:.  .::. :.:..:::::::....::...::.::.::::.
CCDS14 MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 LLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGV
       :::::::::.:. .:.: :. ..:.... . .   ::.::..::.:.::::::::.:. .
CCDS14 LLDLCLADGIRSAVCFPFVLASVRHGSSWTFS---ALSCKIVAFMAVLFCFHAAFMLFCI
               70        80        90          100       110       

        120       130       140       150       160          170   
pF1KE0 GVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDD---EDAPCAL
       .::::.:::::::::.:.. : :::. .: ::.:..: :::::.: :      :.  : .
CCDS14 SVTRYMAIAHHRFYAKRMTLWTCAAV-ICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIF
       120       130       140        150       160       170      

           180       190       200       210       220       230   
pF1KE0 EQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPG
       :.:   :  .:::.:.:::...::: :: .::.: . .:::.:...:::.:..:::::::
CCDS14 EHRYFKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPG
        180       190       200       210       220       230      

           240       250       260       270       280       290   
pF1KE0 ATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLF
       ::::::::: ::::::: ::.:.:::  : . ..:::: ..: : ::.: .::::.::::
CCDS14 ATGQAAANWIAGFGRGPMPPTLLGIRQNGHA-ASRRLLGMDEVKGEKQLGRMFYAITLLF
        240       250       260        270       280       290     

           300       310       320       330       340       350   
pF1KE0 LLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQF
       ::::.::.:: : ::.:.  :::. ::...::..::::..::.::::.:..:. :.:.. 
CCDS14 LLLWSPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHA
         300       310       320       330       340       350     

           360       370     
pF1KE0 PCCQSPRTTQATHPCDLKGIGL
       ::                    
CCDS14 PCWGTGGAPAPREPYCVM    
         360       370       

>>CCDS5758.1 GPR85 gene_id:54329|Hs108|chr7               (370 aa)
 initn: 1263 init1: 802 opt: 1322  Z-score: 1101.1  bits: 212.4 E(32554): 5.2e-55
Smith-Waterman score: 1322; 55.2% identity (82.3% similar) in 344 aa overlap (20-360:22-361)

                 10        20        30        40        50        
pF1KE0   MANASEPGGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLL
                            :::..:.... ::..::.:...:.:....:::::::.::
CCDS57 MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLL
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE0 DLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGV
       ::: .: ::.  :.: :. ... ... .    :.: ::..:::..: :::.::.:. ..:
CCDS57 DLCCSDILRSAICFPFVFNSVKNGSTWTY---GTLTCKVIAFLGVLSCFHTAFMLFCISV
               70        80           90       100       110       

      120       130       140       150       160          170     
pF1KE0 TRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDD---EDAPCALEQ
       ::::::::::::..::. : : :. .: .:.:..: ::::::: :  .   :.  :....
CCDS57 TRYLAIAHHRFYTKRLTFWTCLAV-ICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQH
       120       130       140        150       160       170      

         180       190       200       210       220       230     
pF1KE0 RPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGAT
       :   :  .:::.::::... ::.::::.:.::.::::::.:...: :::..::::::::.
CCDS57 RSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGAS
        180       190       200       210       220       230      

         240       250       260       270       280       290     
pF1KE0 GQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLL
       ::::::: ::::::::::.:.:::  .   : ::::::.::: :::. .::: .:.::: 
CCDS57 GQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLT
        240       250       260       270       280       290      

         300       310       320       330       340       350     
pF1KE0 LWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPC
       :::::.:: : ::..:  .:: ..:::.::..:::::::: ::.. ::::: :: . .  
CCDS57 LWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLY
        300       310       320       330       340       350      

         360       370     
pF1KE0 CQSPRTTQATHPCDLKGIGL
       :.. :               
CCDS57 CRKSRLPREPYCVI      
        360       370      




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:45:12 2016 done: Sun Nov  6 17:45:12 2016
 Total Scan time:  3.290 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]