FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0744, 424 aa
  1>>>pF1KE0744 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4574+/-0.000988; mu= -5.1755+/- 0.058
 mean_var=401.6332+/-85.806, 0's: 0 Z-trim(115.6): 520  B-trim: 0 in 0/53
 Lambda= 0.063997
 statistics sampled from 15561 (16169) to 15561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.497), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(32554)
CCDS32416.1 SBK1 gene_id:388228|Hs108|chr16        ( 424) 2909 282.5 5.3e-76
CCDS42631.1 SBK2 gene_id:646643|Hs108|chr19        ( 348)  734 81.6 1.3e-15
CCDS74457.1 SBK3 gene_id:100130827|Hs108|chr19     ( 359)  674 76.1 6.2e-14


>>CCDS32416.1 SBK1 gene_id:388228|Hs108|chr16             (424 aa)
 initn: 2909 init1: 2909 opt: 2909  Z-score: 1478.0  bits: 282.5 E(32554): 5.3e-76
Smith-Waterman score: 2909; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KE0 MSVGCPEPEPPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSVGCPEPEPPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KGTYGKVDLVVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KGTYGKVDLVVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDCYVFAQEYAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDCYVFAQEYAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LLFDRECRRVKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGRADGLAVDTGVDVWAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLFDRECRRVKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGRADGLAVDTGVDVWAFG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VLIFCVLTGNFPWEAASGADAFFEEFVRWQRGRLPGLPSQWRRFTEPALRMFQRLLALEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLIFCVLTGNFPWEAASGADAFFEEFVRWQRGRLPGLPSQWRRFTEPALRMFQRLLALEP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ERRGPAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ERRGPAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 SGSRPAPPAVGSVPLPVPVPVPVPVPVPVPEPGLAPQGPPGRTDGRADKSKGQVVLATAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SGSRPAPPAVGSVPLPVPVPVPVPVPVPVPEPGLAPQGPPGRTDGRADKSKGQVVLATAI
              370       380       390       400       410       420

           
pF1KE0 EICV
       ::::
CCDS32 EICV
           

>>CCDS42631.1 SBK2 gene_id:646643|Hs108|chr19             (348 aa)
 initn: 711 init1: 539 opt: 734  Z-score: 393.8  bits: 81.6 E(32554): 1.3e-15
Smith-Waterman score: 734; 42.9% identity (69.6% similar) in 273 aa overlap (34-303:43-315)

            10        20        30        40        50        60   
pF1KE0 GCPEPEPPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELGKGT
                                     :::..:. .::. ..: . :: :: ::.: 
CCDS42 AGASEDSEEEGLGGLTLEELQQGQEAARALEDMMTLSAQTLVRAEVDELYEEVRPLGQGC
             20        30        40        50        60        70  

            70        80        90       100       110       120   
pF1KE0 YGKVDLVVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFETEDC
       ::.: ::...  :: .::: . : .:.:..:: :  .  ::..   :. .. . .:.   
CCDS42 YGRVLLVTHRQKGTPLALKQLPKPRTSLRGFLYEFCVGLSLGAHSAIVTAYGIGIESAHS
             80        90       100       110       120       130  

           130       140       150       160       170       180   
pF1KE0 YVFAQEYAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENVLLF
       : :  : .  :::. .: :.::::. .:.::. ::. ::...:.: ::.::.::::::. 
CCDS42 YSFLTEPVLHGDLMAFIQPKVGLPQPAVHRCAAQLASALEYIHARGLVYRDLKPENVLVC
            140       150       160       170       180       190  

           190       200       210       220        230       240  
pF1KE0 DRECRRVKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGR-ADGLAVDTGVDVWAFGVL
       :  ::: ::.::: ::  :  .. ..  :::::::.:      .:: .. ..:.::.:::
CCDS42 DPACRRFKLTDFGHTRPRGTLLRLAGPPIPYTAPELCAPPPLPEGLPIQPALDAWALGVL
            200       210       220       230       240       250  

            250        260       270        280       290       300
pF1KE0 IFCVLTGNFPWEAA-SGADAFFEEFVRWQRGRLP-GLPSQWRRFTEPALRMFQRLLALEP
       .::.::: :::.   . :: :.:.:. :: .  :   :. :  ..  :  ... ::  .:
CCDS42 LFCLLTGYFPWDRPLAEADPFYEDFLIWQASGQPRDRPQPWFGLAAAADALLRGLLDPHP
            260       270       280       290       300       310  

              310       320       330       340       350       360
pF1KE0 ERRGPAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESG
       .::                                                         
CCDS42 RRRSAVIAIREHLGRPWRQREGEAEAVGAVEEEAGQ                        
            320       330       340                                

>>CCDS74457.1 SBK3 gene_id:100130827|Hs108|chr19          (359 aa)
 initn: 672 init1: 390 opt: 674  Z-score: 363.7  bits: 76.1 E(32554): 6.2e-14
Smith-Waterman score: 674; 39.9% identity (65.2% similar) in 276 aa overlap (40-313:30-304)

      10        20        30        40        50        60         
pF1KE0 PPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELGKGTYGKVDL
                                     : :.  . ..  .:.:.:.::.:.::.: :
CCDS74  MERRASETPEDGDPEEDTATALQRLVELTTSRVTPVRSLRDQYHLIRKLGSGSYGRVLL
                10        20        30        40        50         

      70        80        90       100       110       120         
pF1KE0 VVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFETEDCYVFAQE
       .  .  :  .:::.. .. .  ..::::  .   .:. : .....   ..:   ..::::
CCDS74 AQPHQGGPAVALKLLRRDLVLRSTFLREFCVGRCVSAHPGLLQTLAGPLQTPRYFAFAQE
      60        70        80        90       100       110         

     130       140       150       160       170       180         
pF1KE0 YAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENVLLFDRECRR
       ::: :::  ..  . ::::  ::: : ::. ::::.:.: ::: :.::.:::.::  : :
CCDS74 YAPCGDLSGMLQER-GLPELLVKRVVAQLAGALDFLHSRGLVHADVKPDNVLVFDPVCSR
     120       130        140       150       160       170        

     190       200       210       220       230       240         
pF1KE0 VKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGRADGLAVDTGVDVWAFGVLIFCVLTG
       : :.:.:.::  :  .      .: . ::.:     : : .  .:: :..:::.::. :.
CCDS74 VALGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLPPDTLPLRPAVDSWGLGVLLFCAATA
      180       190       200       210       220       230        

     250       260         270       280       290       300       
pF1KE0 NFPWEAASGADAFFEEFVRW--QRGRLPGLPSQWRRFTEPALRMFQRLLALEPERRGPAK
        :::..: . .  :: :. :   . . :  :  : .:. ::: ..: :: :.:: :.:  
CCDS74 CFPWDVALAPNPEFEAFAGWVTTKPQPPQPPPPWDQFAPPALALLQGLLDLDPETRSPPL
      240       250       260       270       280       290        

       310       320       330       340       350       360       
pF1KE0 EVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESGSGSRPAP
        :. ::                                                      
CCDS74 AVLDFLGDDWGLQGNREGPGVLGSAVSYEDREEGGSSLEEWTDEGDDSKSGGRTGTDGGA
      300       310       320       330       340       350        




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:23:59 2016 done: Sun Nov  6 05:24:00 2016
 Total Scan time:  3.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]