FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0643, 434 aa
  1>>>pF1KE0643 434 - 434 aa - 434 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8731+/-0.000709; mu= 8.8800+/- 0.043
 mean_var=209.6026+/-44.523, 0's: 0 Z-trim(117.6): 19  B-trim: 2045 in 2/52
 Lambda= 0.088588
 statistics sampled from 18371 (18390) to 18371 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.565), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS4074.1 GPR150 gene_id:285601|Hs108|chr5        ( 434) 3063 403.4 2.2e-112


>>CCDS4074.1 GPR150 gene_id:285601|Hs108|chr5             (434 aa)
 initn: 3063 init1: 3063 opt: 3063  Z-score: 2131.0  bits: 403.4 E(32554): 2.2e-112
Smith-Waterman score: 3063; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KE0 MEDLFSPSILPPAPNISVPILLGWGLNLTLGQGAPASGPPSRRVRLVFLGVILVVAVAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MEDLFSPSILPPAPNISVPILLGWGLNLTLGQGAPASGPPSRRVRLVFLGVILVVAVAGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TTVLCRLCGGGGPWAGPKRRKMDFLLVQLALADLYACGGTALSQLAWELLGEPRAATGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TTVLCRLCGGGGPWAGPKRRKMDFLLVQLALADLYACGGTALSQLAWELLGEPRAATGDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ACRFLQLLQASGRGASAHLVVLIALERRRAVRLPHGRPLPARALAALGWLLALLLALPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ACRFLQLLQASGRGASAHLVVLIALERRRAVRLPHGRPLPARALAALGWLLALLLALPPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FVVRGDSPSPLPPPPPPTSLQPGAPPAARAWPGERRCHGIFAPLPRWHLQVYAFYEAVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FVVRGDSPSPLPPPPPPTSLQPGAPPAARAWPGERRCHGIFAPLPRWHLQVYAFYEAVAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FVAPVTVLGVACGHLLSVWWRHRPQAPAAAAPWSASPGRAPAPSALPRAKVQSLKMSLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FVAPVTVLGVACGHLLSVWWRHRPQAPAAAAPWSASPGRAPAPSALPRAKVQSLKMSLLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ALLFVGCELPYFAARLAAAWSSGPAGDWEGEGLSAALRVVAMANSALNPFVYLFFQAGDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ALLFVGCELPYFAARLAAAWSSGPAGDWEGEGLSAALRVVAMANSALNPFVYLFFQAGDC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 RLRRQLRKRLGSLCCAPQGGAEDEEGPRGHQALYRQRWPHPHYHHARREPLDEGGLRPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RLRRQLRKRLGSLCCAPQGGAEDEEGPRGHQALYRQRWPHPHYHHARREPLDEGGLRPPP
              370       380       390       400       410       420

              430    
pF1KE0 PRPRPLPCSCESAF
       ::::::::::::::
CCDS40 PRPRPLPCSCESAF
              430    




434 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:11:47 2016 done: Sun Nov  6 17:11:47 2016
 Total Scan time:  4.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]