FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0599, 192 aa
  1>>>pF1KE0599 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4640+/-0.000703; mu= 8.5969+/- 0.043
 mean_var=95.4620+/-19.167, 0's: 0 Z-trim(111.9): 10  B-trim: 0 in 0/51
 Lambda= 0.131268
 statistics sampled from 12739 (12744) to 12739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.391), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS11914.1 INO80C gene_id:125476|Hs108|chr18      ( 192) 1260 247.9 2.8e-66
CCDS45853.1 INO80C gene_id:125476|Hs108|chr18      ( 228)  931 185.6 1.9e-47
CCDS77177.1 INO80C gene_id:125476|Hs108|chr18      ( 137)  913 182.1 1.3e-46


>>CCDS11914.1 INO80C gene_id:125476|Hs108|chr18           (192 aa)
 initn: 1260 init1: 1260 opt: 1260  Z-score: 1303.3  bits: 247.9 E(32554): 2.8e-66
Smith-Waterman score: 1260; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE0 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG
              130       140       150       160       170       180

              190  
pF1KE0 YLALRKATSIVP
       ::::::::::::
CCDS11 YLALRKATSIVP
              190  

>>CCDS45853.1 INO80C gene_id:125476|Hs108|chr18           (228 aa)
 initn: 1246 init1: 931 opt: 931  Z-score: 965.5  bits: 185.6 E(32554): 1.9e-47
Smith-Waterman score: 1154; 83.9% identity (83.9% similar) in 224 aa overlap (5-192:5-228)

               10        20        30        40        50          
pF1KE0 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQ--------
           ::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS45 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQTCLSPSTM
               10        20        30        40        50        60

                                         60        70        80    
pF1KE0 ----------------------------GISMEAMSENKMVPSEFSTGPVEKAAKPLPFK
                                   ::::::::::::::::::::::::::::::::
CCDS45 IVRPPQPRGTTCLLPSAMIVRPPQPRGNGISMEAMSENKMVPSEFSTGPVEKAAKPLPFK
               70        80        90       100       110       120

           90       100       110       120       130       140    
pF1KE0 DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD
              130       140       150       160       170       180

          150       160       170       180       190  
pF1KE0 VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP
              190       200       210       220        

>>CCDS77177.1 INO80C gene_id:125476|Hs108|chr18           (137 aa)
 initn: 913 init1: 913 opt: 913  Z-score: 950.4  bits: 182.1 E(32554): 1.3e-46
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 137 aa overlap (56-192:1-137)

          30        40        50        60        70        80     
pF1KE0 SPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAAKPLPFKD
                                     ::::::::::::::::::::::::::::::
CCDS77                               MEAMSENKMVPSEFSTGPVEKAAKPLPFKD
                                             10        20        30

          90       100       110       120       130       140     
pF1KE0 PNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV
               40        50        60        70        80        90

         150       160       170       180       190  
pF1KE0 SGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP
              100       110       120       130       




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:41:54 2016 done: Sun Nov  6 13:41:54 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]