FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0590, 435 aa
  1>>>pF1KE0590 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6134+/-0.000732; mu= 17.4100+/- 0.044
 mean_var=83.8403+/-17.072, 0's: 0 Z-trim(110.8): 12  B-trim: 255 in 1/52
 Lambda= 0.140071
 statistics sampled from 11894 (11899) to 11894 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.366), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS10998.1 NXN gene_id:64359|Hs108|chr17          ( 435) 2921 599.7 1.9e-171
CCDS56013.1 NXN gene_id:64359|Hs108|chr17          ( 327) 2106 434.9 5.6e-122


>>CCDS10998.1 NXN gene_id:64359|Hs108|chr17               (435 aa)
 initn: 2921 init1: 2921 opt: 2921  Z-score: 3191.7  bits: 599.7 E(32554): 1.9e-171
Smith-Waterman score: 2921; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KE0 MSGFLEELLGEKLVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSGFLEELLGEKLVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 DCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 AKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEA
              370       380       390       400       410       420

              430     
pF1KE0 FVNDFLAEKLKPEPI
       :::::::::::::::
CCDS10 FVNDFLAEKLKPEPI
              430     

>>CCDS56013.1 NXN gene_id:64359|Hs108|chr17               (327 aa)
 initn: 2105 init1: 2105 opt: 2106  Z-score: 2303.4  bits: 434.9 E(32554): 5.6e-122
Smith-Waterman score: 2106; 98.8% identity (99.1% similar) in 321 aa overlap (118-435:7-327)

        90       100       110       120          130       140    
pF1KE0 IVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRK---LKLWNKYRISNIPSLIFLDATTGK
                                     ::.   ::::::::::::::::::::::::
CCDS56                         MADVSLHRNPATLKLWNKYRISNIPSLIFLDATTGK
                                       10        20        30      

          150       160       170       180       190       200    
pF1KE0 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHW
         40        50        60        70        80        90      

          210       220       230       240       250       260    
pF1KE0 CPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRS
        100       110       120       130       140       150      

          270       280       290       300       310       320    
pF1KE0 RLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQLN
        160       170       180       190       200       210      

          330       340       350       360       370       380    
pF1KE0 EGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRD
        220       230       240       250       260       270      

          390       400       410       420       430     
pF1KE0 YTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEAFVNDFLAEKLKPEPI
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEAFVNDFLAEKLKPEPI
        280       290       300       310       320       




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:25:59 2016 done: Mon Nov  7 14:26:00 2016
 Total Scan time:  3.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]