FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0453, 227 aa
  1>>>pF1KE0453 227 - 227 aa - 227 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0567+/-0.000311; mu= 15.3222+/- 0.019
 mean_var=60.5298+/-12.090, 0's: 0 Z-trim(117.2): 23  B-trim: 708 in 2/52
 Lambda= 0.164850
 statistics sampled from 29045 (29068) to 29045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.341), width:  16
 Scan time:  6.600

The best scores are:                                      opt bits E(85289)
NP_008937 (OMIM: 604978) cleavage and polyadenylat ( 227) 1542 374.6 7.5e-104


>>NP_008937 (OMIM: 604978) cleavage and polyadenylation   (227 aa)
 initn: 1542 init1: 1542 opt: 1542  Z-score: 1985.4  bits: 374.6 E(85289): 7.5e-104
Smith-Waterman score: 1542; 99.1% identity (99.6% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE0 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELDPGEDEVEG
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_008 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
              130       140       150       160       170       180

              190       200       210       220       
pF1KE0 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQPLSRFNFIYN
       ::::::::::::::::::::::::::::::::::::: :::::::::
NP_008 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
              190       200       210       220       




227 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:44:29 2016 done: Mon Nov  7 03:44:30 2016
 Total Scan time:  6.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]