FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0400, 366 aa
  1>>>pF1KE0400 366 - 366 aa - 366 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7947+/-0.000711; mu= 13.9478+/- 0.042
 mean_var=72.1478+/-14.412, 0's: 0 Z-trim(109.5): 35  B-trim: 0 in 0/51
 Lambda= 0.150995
 statistics sampled from 10910 (10940) to 10910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.336), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1          ( 366) 2522 558.3 3.7e-159
CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1         ( 366) 2409 533.7 9.4e-152
CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1         ( 332) 1672 373.2 1.8e-103


>>CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1               (366 aa)
 initn: 2522 init1: 2522 opt: 2522  Z-score: 2971.0  bits: 558.3 E(32554): 3.7e-159
Smith-Waterman score: 2522; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KE0 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
              310       320       330       340       350       360

             
pF1KE0 PRRLQP
       ::::::
CCDS15 PRRLQP
             

>>CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1              (366 aa)
 initn: 2409 init1: 2409 opt: 2409  Z-score: 2837.9  bits: 533.7 E(32554): 9.4e-152
Smith-Waterman score: 2409; 95.6% identity (98.6% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KE0 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
       : ::::::::::::::.:::::: :::::::::::::.:::.:::::::.::::.:::::
CCDS15 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL
       ::.::.::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS15 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS15 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
       :: :::::::::::::::::::::::::::::::::::.::::::::::::::::::.::
CCDS15 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
       ::::::.:::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS15 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
              310       320       330       340       350       360

             
pF1KE0 PRRLQP
       ::::::
CCDS15 PRRLQP
             

>>CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1              (332 aa)
 initn: 1672 init1: 1672 opt: 1672  Z-score: 1970.9  bits: 373.2 E(32554): 1.8e-103
Smith-Waterman score: 2222; 90.7% identity (90.7% similar) in 366 aa overlap (1-366:1-332)

               10        20        30        40        50        60
pF1KE0 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL
       ::::::::::::::::::::::::::::::::::                          
CCDS53 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEA--------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE0 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 --------ALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
                  100       110       120       130       140      

              190       200       210       220       230       240
pF1KE0 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KE0 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
        210       220       230       240       250       260      

              310       320       330       340       350       360
pF1KE0 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
        270       280       290       300       310       320      

             
pF1KE0 PRRLQP
       ::::::
CCDS53 PRRLQP
        330  




366 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:02:41 2016 done: Sun Nov  6 08:02:42 2016
 Total Scan time:  2.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]