FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0397, 89 aa
  1>>>pF1KE0397 89 - 89 aa - 89 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4153+/-0.000536; mu= 12.7895+/- 0.032
 mean_var=49.8207+/- 9.864, 0's: 0 Z-trim(112.4): 5  B-trim: 0 in 0/50
 Lambda= 0.181706
 statistics sampled from 13155 (13158) to 13155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.404), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS8125.1 BANF1 gene_id:8815|Hs108|chr11          (  89)  620 169.1 3.3e-43
CCDS13129.1 BANF2 gene_id:140836|Hs108|chr20       (  90)  240 69.5 3.2e-13
CCDS54449.1 BANF2 gene_id:140836|Hs108|chr20       (  97)  240 69.5 3.4e-13


>>CCDS8125.1 BANF1 gene_id:8815|Hs108|chr11               (89 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 889.3  bits: 169.1 E(32554): 3.3e-43
Smith-Waterman score: 620; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
               10        20        30        40        50        60

               70        80         
pF1KE0 EWLKDTCGANAKQSRDCFGCLREWCDAFL
       :::::::::::::::::::::::::::::
CCDS81 EWLKDTCGANAKQSRDCFGCLREWCDAFL
               70        80         

>>CCDS13129.1 BANF2 gene_id:140836|Hs108|chr20            (90 aa)
 initn: 240 init1: 240 opt: 240  Z-score: 350.8  bits: 69.5 E(32554): 3.2e-13
Smith-Waterman score: 240; 41.9% identity (72.1% similar) in 86 aa overlap (4-89:5-90)

                10        20        30        40        50         
pF1KE0  MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLF
           : . : :..::.::: :  . ::.. :. .:  .:..:::..:::::...:.:  :
CCDS13 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF
               10        20        30        40        50        60

      60        70        80         
pF1KE0 REWLKDTCGANAKQSRDCFGCLREWCDAFL
       ..::    ::.  ....   ::.:::  ::
CCDS13 QRWLICCFGATECEAQQTSHCLKEWCACFL
               70        80        90

>>CCDS54449.1 BANF2 gene_id:140836|Hs108|chr20            (97 aa)
 initn: 240 init1: 240 opt: 240  Z-score: 350.3  bits: 69.5 E(32554): 3.4e-13
Smith-Waterman score: 240; 41.9% identity (72.1% similar) in 86 aa overlap (4-89:12-97)

                       10        20        30        40        50  
pF1KE0         MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVL
                  : . : :..::.::: :  . ::.. :. .:  .:..:::..:::::..
CCDS54 MLRGTKEMDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLM
               10        20        30        40        50        60

             60        70        80         
pF1KE0 KKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL
       .:.:  :..::    ::.  ....   ::.:::  ::
CCDS54 HKNEAEFQRWLICCFGATECEAQQTSHCLKEWCACFL
               70        80        90       




89 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:09:36 2016 done: Sun Nov  6 15:09:36 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]