FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0290, 292 aa
  1>>>pF1KE0290 292 - 292 aa - 292 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2920+/-0.000243; mu= 9.6129+/- 0.015
 mean_var=164.7848+/-34.090, 0's: 0 Z-trim(126.4): 4  B-trim: 2905 in 1/57
 Lambda= 0.099912
 statistics sampled from 52198 (52215) to 52198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.612), width:  16
 Scan time:  7.960

The best scores are:                                      opt bits E(85289)
NP_955631 (OMIM: 608226,615413) nanos homolog 1 [H ( 292) 2063 307.9 1.5e-83
NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo  ( 138)  284 51.2 1.3e-06
NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo  ( 192)  263 48.3 1.4e-05
XP_011526266 (OMIM: 608229) PREDICTED: nanos homol ( 196)  263 48.3 1.4e-05


>>NP_955631 (OMIM: 608226,615413) nanos homolog 1 [Homo   (292 aa)
 initn: 2063 init1: 2063 opt: 2063  Z-score: 1621.2  bits: 307.9 E(85289): 1.5e-83
Smith-Waterman score: 2063; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KE0 MEAFPWAPRSPRRGRAPPPMALVPSARYVSAPGPAHPQPFSSWNDYLGLATLITKAVDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MEAFPWAPRSPRRGRAPPPMALVPSARYVSAPGPAHPQPFSSWNDYLGLATLITKAVDGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRFGCARGGNGGGGSPPSSSSSSCCSPHTGAGPGALGPALGPPDYDEDDDDDSDEPGSRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 PRFGCARGGNGGGGSPPSSSSSSCCSPHTGAGPGALGPALGPPDYDEDDDDDSDEPGSRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RYLGSALELRALELCAGPAEAGLLEERFAELSPFAGRAAAVLLGCAPAAAAAATTTSEAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 RYLGSALELRALELCAGPAEAGLLEERFAELSPFAGRAAAVLLGCAPAAAAAATTTSEAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PREERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 PREERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVL
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KE0 CPVLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 CPVLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR
              250       260       270       280       290  

>>NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo sapi  (138 aa)
 initn: 351 init1: 271 opt: 284  Z-score: 239.6  bits: 51.2 E(85289): 1.3e-06
Smith-Waterman score: 284; 47.5% identity (76.2% similar) in 80 aa overlap (213-292:62-137)

            190       200       210       220       230       240  
pF1KE0 EERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVLCP
                                     .: ::..: :.  .:..: :: ::: :.::
NP_001 TQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCP
              40        50        60        70        80        90 

            250       260       270       280       290   
pF1KE0 VLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR 
       .::.:.::.:::.::.:::.:::::.       :   ::.:..  :.... 
NP_001 ILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYR---RSGRNSA-GRRVKR
             100       110       120          130         

>>NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo sapi  (192 aa)
 initn: 303 init1: 255 opt: 263  Z-score: 221.4  bits: 48.3 E(85289): 1.4e-05
Smith-Waterman score: 265; 35.4% identity (54.4% similar) in 147 aa overlap (122-268:10-131)

             100       110       120       130       140       150 
pF1KE0 GPGALGPALGPPDYDEDDDDDSDEPGSRGRYLGSALELRALELCAGPAEAGLLEERFAEL
                                     ::: :  .:::    ::      : :   :
NP_001                      MGTFDLWTDYLGLAHLVRALSGKEGP------ETR---L
                                    10        20                 30

             160       170       180       190       200       210 
pF1KE0 SPFAGRAAAVLLGCAPAAAAAATTTSEATPREERAPAWAAEPRLHAASGAAAARLLKPEL
       ::             :      ... :  :  : .:. . . . ..  .. :     :: 
NP_001 SPQP----------EPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLESSPA-----PE-
                         40        50        60        70          

             220       230       240       250       260       270 
pF1KE0 QVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLSKVP
       ..: ::..: :. :.: .:.::   ::::::.:: :.:: :::. . ::: ..:::.   
NP_001 RLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTGQG
           80        90       100       110       120       130    

             280       290                                       
pF1KE0 PPPARPPPRSARDGPPGKKLR                                     
                                                                 
NP_001 YTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKSEPSPSCSPSMST
          140       150       160       170       180       190  

>>XP_011526266 (OMIM: 608229) PREDICTED: nanos homolog 3  (196 aa)
 initn: 287 init1: 255 opt: 263  Z-score: 221.2  bits: 48.3 E(85289): 1.4e-05
Smith-Waterman score: 265; 35.4% identity (54.4% similar) in 147 aa overlap (122-268:10-131)

             100       110       120       130       140       150 
pF1KE0 GPGALGPALGPPDYDEDDDDDSDEPGSRGRYLGSALELRALELCAGPAEAGLLEERFAEL
                                     ::: :  .:::    ::      : :   :
XP_011                      MGTFDLWTDYLGLAHLVRALSGKEGP------ETR---L
                                    10        20                 30

             160       170       180       190       200       210 
pF1KE0 SPFAGRAAAVLLGCAPAAAAAATTTSEATPREERAPAWAAEPRLHAASGAAAARLLKPEL
       ::             :      ... :  :  : .:. . . . ..  .. :     :: 
XP_011 SPQP----------EPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLESSPA-----PE-
                         40        50        60        70          

             220       230       240       250       260       270 
pF1KE0 QVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLSKVP
       ..: ::..: :. :.: .:.::   ::::::.:: :.:: :::. . ::: ..:::.   
XP_011 RLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTGQG
           80        90       100       110       120       130    

             280       290                                         
pF1KE0 PPPARPPPRSARDGPPGKKLR                                       
                                                                   
XP_011 YTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGACTGFRGAGKSEPSPSCSPSM
          140       150       160       170       180       190    




292 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:29:42 2016 done: Tue Nov  8 07:29:43 2016
 Total Scan time:  7.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]