FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0290, 292 aa
  1>>>pF1KE0290 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0027+/-0.000608; mu= 11.7306+/- 0.037
 mean_var=163.8203+/-33.414, 0's: 0 Z-trim(118.9): 5  B-trim: 231 in 1/51
 Lambda= 0.100205
 statistics sampled from 19976 (19981) to 19976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.614), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS7607.1 NANOS1 gene_id:340719|Hs108|chr10       ( 292) 2063 308.7 3.2e-84


>>CCDS7607.1 NANOS1 gene_id:340719|Hs108|chr10            (292 aa)
 initn: 2063 init1: 2063 opt: 2063  Z-score: 1625.4  bits: 308.7 E(32554): 3.2e-84
Smith-Waterman score: 2063; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KE0 MEAFPWAPRSPRRGRAPPPMALVPSARYVSAPGPAHPQPFSSWNDYLGLATLITKAVDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MEAFPWAPRSPRRGRAPPPMALVPSARYVSAPGPAHPQPFSSWNDYLGLATLITKAVDGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRFGCARGGNGGGGSPPSSSSSSCCSPHTGAGPGALGPALGPPDYDEDDDDDSDEPGSRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PRFGCARGGNGGGGSPPSSSSSSCCSPHTGAGPGALGPALGPPDYDEDDDDDSDEPGSRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RYLGSALELRALELCAGPAEAGLLEERFAELSPFAGRAAAVLLGCAPAAAAAATTTSEAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RYLGSALELRALELCAGPAEAGLLEERFAELSPFAGRAAAVLLGCAPAAAAAATTTSEAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PREERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PREERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVL
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KE0 CPVLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 CPVLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR
              250       260       270       280       290  




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:29:41 2016 done: Tue Nov  8 07:29:42 2016
 Total Scan time:  2.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]