Result of FASTA (ccds) for
pFN21AE0242
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0242, 452 aa
1>>>pF1KE0242 452 - 452 aa - 452 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7328+/-0.000677; mu= 13.9482+/- 0.041
mean_var=141.3697+/-27.752, 0's: 0 Z-trim(115.6): 10 B-trim: 97 in 1/53
Lambda= 0.107869
statistics sampled from 16115 (16123) to 16115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.495), width: 16
Scan time: 3.400
The best scores are: opt bits E(32554)
CCDS12522.1 RINL gene_id:126432|Hs108|chr19 ( 452) 3107 494.4 9.7e-140
CCDS59386.1 RINL gene_id:126432|Hs108|chr19 ( 566) 3107 494.5 1.1e-139
CCDS32144.1 RIN3 gene_id:79890|Hs108|chr14 ( 985) 450 81.2 5e-15
>>CCDS12522.1 RINL gene_id:126432|Hs108|chr19 (452 aa)
initn: 3107 init1: 3107 opt: 3107 Z-score: 2622.3 bits: 494.4 E(32554): 9.7e-140
Smith-Waterman score: 3107; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KE0 MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQDTPGKVLSIVNQLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQDTPGKVLSIVNQLY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LETHRGWGREQTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLSPEVDHPGPALASLLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LETHRGWGREQTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLSPEVDHPGPALASLLEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EEEDLEGKEEGREDDPEEEGPEDVLTIHVQSLVRARSSYVARQYRSLRVRIASDSGGPHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEEDLEGKEEGREDDPEEEGPEDVLTIHVQSLVRARSSYVARQYRSLRVRIASDSGGPHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SGDPATELLQDVRHLLTDLQDHLAKDSYIRAVFGSRGPGLPKKDEDPGPALETAVCQAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGDPATELLQDVRHLLTDLQDHLAKDSYIRAVFGSRGPGLPKKDEDPGPALETAVCQAVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 APLKPALWTRLRTLRAPELRRLRRRQTALRAGAGPPGAQGPGPEGQSPAPALRSRIHERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APLKPALWTRLRTLRAPELRRLRRRQTALRAGAGPPGAQGPGPEGQSPAPALRSRIHERL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDTQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 DVEFLMELLDPDELRGEAGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DVEFLMELLDPDELRGEAGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRR
370 380 390 400 410 420
430 440 450
pF1KE0 RTLHRKDHPRAQANLPFKEPWAEETVTGTSDN
::::::::::::::::::::::::::::::::
CCDS12 RTLHRKDHPRAQANLPFKEPWAEETVTGTSDN
430 440 450
>>CCDS59386.1 RINL gene_id:126432|Hs108|chr19 (566 aa)
initn: 3107 init1: 3107 opt: 3107 Z-score: 2621.0 bits: 494.5 E(32554): 1.1e-139
Smith-Waterman score: 3107; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:115-566)
10 20 30
pF1KE0 MPDLPHLLAFLSASRDVLPRTLLLPPPTLG
::::::::::::::::::::::::::::::
CCDS59 LRSGPLPGEVNTYQIQKIPRGVSLESSNLCMPDLPHLLAFLSASRDVLPRTLLLPPPTLG
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE0 PRDEHTDPVQIGRVQQDTPGKVLSIVNQLYLETHRGWGREQTPQETEPEAAQRHDPAPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PRDEHTDPVQIGRVQQDTPGKVLSIVNQLYLETHRGWGREQTPQETEPEAAQRHDPAPRN
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 PAPHGVSWVKGPLSPEVDHPGPALASLLEEEEEDLEGKEEGREDDPEEEGPEDVLTIHVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PAPHGVSWVKGPLSPEVDHPGPALASLLEEEEEDLEGKEEGREDDPEEEGPEDVLTIHVQ
210 220 230 240 250 260
160 170 180 190 200 210
pF1KE0 SLVRARSSYVARQYRSLRVRIASDSGGPHGSGDPATELLQDVRHLLTDLQDHLAKDSYIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SLVRARSSYVARQYRSLRVRIASDSGGPHGSGDPATELLQDVRHLLTDLQDHLAKDSYIR
270 280 290 300 310 320
220 230 240 250 260 270
pF1KE0 AVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPELRRLRRRQTALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPELRRLRRRQTALR
330 340 350 360 370 380
280 290 300 310 320 330
pF1KE0 AGAGPPGAQGPGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLLEVCRDVYAGLARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AGAGPPGAQGPGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLLEVCRDVYAGLARG
390 400 410 420 430 440
340 350 360 370 380 390
pF1KE0 ENQDPLGADAFLPALTEELIWSPDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ENQDPLGADAFLPALTEELIWSPDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALH
450 460 470 480 490 500
400 410 420 430 440 450
pF1KE0 HIAHYQPETDRAPRGLSSEARASLHQWHRRRTLHRKDHPRAQANLPFKEPWAEETVTGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HIAHYQPETDRAPRGLSSEARASLHQWHRRRTLHRKDHPRAQANLPFKEPWAEETVTGTS
510 520 530 540 550 560
pF1KE0 DN
::
CCDS59 DN
>>CCDS32144.1 RIN3 gene_id:79890|Hs108|chr14 (985 aa)
initn: 282 init1: 132 opt: 450 Z-score: 383.2 bits: 81.2 E(32554): 5e-15
Smith-Waterman score: 479; 29.1% identity (57.9% similar) in 444 aa overlap (18-431:449-874)
10 20 30 40
pF1KE0 MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQD
:::: ::. :: .. . :.. .
CCDS32 SDGPEDTPRESTEQGQDTEVKASDPHSMPELPRTAK-QPPVPPPRKKRISR-QLASTLP-
420 430 440 450 460 470
50 60 70 80 90 100
pF1KE0 TPGKVLSIVNQ-LYLETHR-GWGRE-QTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLS
.: . . .: . ::: : :: :.: .:. .: :: . .. :: :.
CCDS32 APLENAELCTQAMALETPTPGPPREGQSPA---SQAGTQHPPAQATAHSQSSPEFKGSLA
480 490 500 510 520 530
110 120 130 140 150 160
pF1KE0 PEVDHPGPALASLLEEEEEDLEGKEEGRE-DDPE-EEGPEDVL--TIHVQSLVRARSSYV
: : .. . .. .:: .. ..: .. : .: . : :.. : .
CCDS32 SLSDSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFH
540 550 560 570 580 590
170 180 190 200
pF1KE0 A-----RQYRSLRVRIASDSGGPHGS---------------GDPATELLQDVRHLLTDLQ
: :. . :..:.:.:. :: .::.::..: ..:.:.
CCDS32 AFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIRTMMTQLK
600 610 620 630 640 650
210 220 230 240 250
pF1KE0 DHLAKDSYIRAVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPE--
..: ... ..:. :.: ...:. .:.:. . :: ::: :. . :. ... .
CCDS32 SYLLQSTELKALVD---PAL-HSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGS
660 670 680 690 700
260 270 280 290 300 310
pF1KE0 LRRLRRRQTALRAGAGPP-GAQGPGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLL
:..:.. : .. : . :. :: .: .. .: .... .: : .:..:...::
CCDS32 LQQLKENQLVILATTTTDLGVTTSVPE----VPMME-KILQKFTSMHKAYSPEKKISILL
710 720 730 740 750 760
320 330 340 350 360 370
pF1KE0 EVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDTQLDVEFLMELLDPDELRGE
..:. .: ..: :. : ::: :::.: : : .. . :.::..:::.:: ::
CCDS32 KTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARS-NLTEMLLNVEYMMELMDPALQLGE
770 780 790 800 810 820
380 390 400 410 420 430
pF1KE0 AGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRRRTLHRKDHPRAQANLPF
..::::: .:::.:: :. : . : :: :.. :.:.:.:::::.. :.
CCDS32 GSYYLTTTYGALEHIKSYDKIT--VTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFI
830 840 850 860 870 880
440 450
pF1KE0 KEPWAEETVTGTSDN
CCDS32 CVSYLEPEQQARTLASRADTQAQALCAQCAEKFAVERPQAHRLFVLVDGRCFQLADDALP
890 900 910 920 930 940
452 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:22:17 2016 done: Sun Nov 6 13:22:17 2016
Total Scan time: 3.400 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]