Result of FASTA (omim) for
pFN21AE0189
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0189, 221 aa
1>>>pF1KE0189 221 - 221 aa - 221 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7528+/-0.000287; mu= 12.4726+/- 0.018
mean_var=85.5341+/-16.748, 0's: 0 Z-trim(119.6): 10 B-trim: 145 in 2/53
Lambda= 0.138677
statistics sampled from 33822 (33832) to 33822 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.397), width: 16
Scan time: 6.760
The best scores are: opt bits E(85289)
XP_016875248 (OMIM: 615027) PREDICTED: protein FAM ( 221) 1538 316.7 1.9e-86
NP_067061 (OMIM: 615027) protein FAM60A [Homo sapi ( 221) 1538 316.7 1.9e-86
XP_016875247 (OMIM: 615027) PREDICTED: protein FAM ( 221) 1538 316.7 1.9e-86
NP_001129283 (OMIM: 615027) protein FAM60A [Homo s ( 221) 1538 316.7 1.9e-86
NP_001129284 (OMIM: 615027) protein FAM60A [Homo s ( 221) 1538 316.7 1.9e-86
XP_016875249 (OMIM: 615027) PREDICTED: protein FAM ( 221) 1538 316.7 1.9e-86
XP_016875250 (OMIM: 615027) PREDICTED: protein FAM ( 221) 1538 316.7 1.9e-86
XP_016875251 (OMIM: 615027) PREDICTED: protein FAM ( 221) 1538 316.7 1.9e-86
XP_011519105 (OMIM: 615027) PREDICTED: protein FAM ( 328) 1538 316.9 2.6e-86
>>XP_016875248 (OMIM: 615027) PREDICTED: protein FAM60A (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
XP_016 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>NP_067061 (OMIM: 615027) protein FAM60A [Homo sapiens] (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
NP_067 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>XP_016875247 (OMIM: 615027) PREDICTED: protein FAM60A (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
XP_016 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>NP_001129283 (OMIM: 615027) protein FAM60A [Homo sapie (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
NP_001 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>NP_001129284 (OMIM: 615027) protein FAM60A [Homo sapie (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
NP_001 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>XP_016875249 (OMIM: 615027) PREDICTED: protein FAM60A (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
XP_016 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>XP_016875250 (OMIM: 615027) PREDICTED: protein FAM60A (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
XP_016 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>XP_016875251 (OMIM: 615027) PREDICTED: protein FAM60A (221 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1673.1 bits: 316.7 E(85289): 1.9e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
130 140 150 160 170 180
190 200 210 220
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
:::::::::::::::::::::::::::::::::::::::::
XP_016 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
190 200 210 220
>>XP_011519105 (OMIM: 615027) PREDICTED: protein FAM60A (328 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1670.7 bits: 316.9 E(85289): 2.6e-86
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:108-328)
10 20 30
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTD
::::::::::::::::::::::::::::::
XP_011 LLAGSASLSAVTGVPEGEARFTEDYCPEEKMFGFHKPKMYRSIEGCCICRAKSSSSRFTD
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE0 SKRYEKDFQSCFGLHETRSGDICNACVLLVKRWKKLPAGSKKNWNHVVDARAGPSLKTTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKRYEKDFQSCFGLHETRSGDICNACVLLVKRWKKLPAGSKKNWNHVVDARAGPSLKTTL
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE0 KPKKVKTLSGNRIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQSDDGSDTEMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPKKVKTLSGNRIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQSDDGSDTEMA
200 210 220 230 240 250
160 170 180 190 200 210
pF1KE0 SGSNRTPVFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSNRTPVFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQG
260 270 280 290 300 310
220
pF1KE0 PEPLPISTQEW
:::::::::::
XP_011 PEPLPISTQEW
320
221 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:29:35 2016 done: Mon Nov 7 14:29:36 2016
Total Scan time: 6.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]