Result of FASTA (omim) for
pFN21AE0132
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0132, 246 aa
1>>>pF1KE0132 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9118+/-0.000479; mu= -1.9917+/- 0.030
mean_var=190.9397+/-39.154, 0's: 0 Z-trim(114.7): 10 B-trim: 269 in 1/55
Lambda= 0.092817
statistics sampled from 24733 (24737) to 24733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.29), width: 16
Scan time: 7.160
The best scores are: opt bits E(85289)
NP_005736 (OMIM: 300398,300475) B-cell receptor-as ( 246) 1532 217.3 1.9e-56
NP_001243376 (OMIM: 300398,300475) B-cell receptor ( 246) 1532 217.3 1.9e-56
NP_001132913 (OMIM: 300398,300475) B-cell receptor ( 246) 1532 217.3 1.9e-56
NP_001132929 (OMIM: 300398,300475) B-cell receptor ( 313) 1532 217.4 2.4e-56
>>NP_005736 (OMIM: 300398,300475) B-cell receptor-associ (246 aa)
initn: 1532 init1: 1532 opt: 1532 Z-score: 1134.3 bits: 217.3 E(85289): 1.9e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
190 200 210 220 230 240
pF1KE0 MDKKEE
::::::
NP_005 MDKKEE
>>NP_001243376 (OMIM: 300398,300475) B-cell receptor-ass (246 aa)
initn: 1532 init1: 1532 opt: 1532 Z-score: 1134.3 bits: 217.3 E(85289): 1.9e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
190 200 210 220 230 240
pF1KE0 MDKKEE
::::::
NP_001 MDKKEE
>>NP_001132913 (OMIM: 300398,300475) B-cell receptor-ass (246 aa)
initn: 1532 init1: 1532 opt: 1532 Z-score: 1134.3 bits: 217.3 E(85289): 1.9e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
190 200 210 220 230 240
pF1KE0 MDKKEE
::::::
NP_001 MDKKEE
>>NP_001132929 (OMIM: 300398,300475) B-cell receptor-ass (313 aa)
initn: 1532 init1: 1532 opt: 1532 Z-score: 1132.7 bits: 217.4 E(85289): 2.4e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:68-313)
10 20 30
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPK
::::::::::::::::::::::::::::::
NP_001 GEAALDVLTHVLEGAGNKLTSSCGKPSSNRMSLQWTAVATFLYAEVFVVLLLCIPFISPK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 RWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAME
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 HFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKY
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 MEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVL
220 230 240 250 260 270
220 230 240
pF1KE0 AMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE
::::::::::::::::::::::::::::::::::::
NP_001 AMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE
280 290 300 310
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:08:19 2016 done: Mon Nov 7 04:08:20 2016
Total Scan time: 7.160 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]