FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9982, 709 aa
  1>>>pF1KB9982 709 - 709 aa - 709 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3965+/-0.00129; mu= 1.3067+/- 0.078
 mean_var=249.1580+/-51.564, 0's: 0 Z-trim(109.1): 75  B-trim: 520 in 2/50
 Lambda= 0.081253
 statistics sampled from 10607 (10661) to 10607 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.327), width:  16
 Scan time:  3.650

The best scores are:                                      opt bits E(32554)
CCDS7952.1 SSRP1 gene_id:6749|Hs108|chr11          ( 709) 4672 561.7 1.4e-159


>>CCDS7952.1 SSRP1 gene_id:6749|Hs108|chr11               (709 aa)
 initn: 4672 init1: 4672 opt: 4672  Z-score: 2978.6  bits: 561.7 E(32554): 1.4e-159
Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709)

               10        20        30        40        50        60
pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF
              610       620       630       640       650       660

              670       680       690       700         
pF1KB9 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
              670       680       690       700         




709 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:23:40 2016 done: Mon Nov  7 02:23:41 2016
 Total Scan time:  3.650 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]