Result of FASTA (omim) for
pFN21AB9939
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9939, 527 aa
1>>>pF1KB9939 527 - 527 aa - 527 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4673+/-0.000367; mu= 17.5530+/- 0.023
mean_var=72.0589+/-14.848, 0's: 0 Z-trim(113.7): 29 B-trim: 41 in 1/54
Lambda= 0.151088
statistics sampled from 23088 (23106) to 23088 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.271), width: 16
Scan time: 8.700
The best scores are: opt bits E(85289)
NP_002683 (OMIM: 602670) DNA polymerase epsilon su ( 527) 3542 781.6 0
XP_016876863 (OMIM: 602670) PREDICTED: DNA polymer ( 546) 3503 773.1 0
NP_001184260 (OMIM: 602670) DNA polymerase epsilon ( 502) 3352 740.1 3.5e-213
XP_016876864 (OMIM: 602670) PREDICTED: DNA polymer ( 450) 3056 675.6 8.5e-194
XP_011535145 (OMIM: 602670) PREDICTED: DNA polymer ( 469) 3017 667.1 3.2e-191
NP_001184259 (OMIM: 602670) DNA polymerase epsilon ( 501) 2873 635.7 9.5e-182
XP_011535144 (OMIM: 602670) PREDICTED: DNA polymer ( 520) 2834 627.2 3.6e-179
XP_011535146 (OMIM: 602670) PREDICTED: DNA polymer ( 265) 1645 367.9 2.1e-101
>>NP_002683 (OMIM: 602670) DNA polymerase epsilon subuni (527 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 4171.7 bits: 781.6 E(85289): 0
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
430 440 450 460 470 480
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
490 500 510 520
>>XP_016876863 (OMIM: 602670) PREDICTED: DNA polymerase (546 aa)
initn: 3503 init1: 3503 opt: 3503 Z-score: 4125.5 bits: 773.1 E(85289): 0
Smith-Waterman score: 3503; 100.0% identity (100.0% similar) in 521 aa overlap (1-521:1-521)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
430 440 450 460 470 480
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::::::::::::::::::::::::
XP_016 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDRSRTVFWGKSQASCGGELV
490 500 510 520 530 540
XP_016 LLQANS
>>NP_001184260 (OMIM: 602670) DNA polymerase epsilon sub (502 aa)
initn: 3352 init1: 3352 opt: 3352 Z-score: 3948.2 bits: 740.1 E(85289): 3.5e-213
Smith-Waterman score: 3352; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
430 440 450 460 470 480
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::
NP_001 ADKYDPFTTTNTECLCINPVRM
490 500
>>XP_016876864 (OMIM: 602670) PREDICTED: DNA polymerase (450 aa)
initn: 3056 init1: 3056 opt: 3056 Z-score: 3600.2 bits: 675.6 E(85289): 8.5e-194
Smith-Waterman score: 3056; 100.0% identity (100.0% similar) in 446 aa overlap (82-527:5-450)
60 70 80 90 100 110
pF1KB9 VEKQPLSSNMIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLM
::::::::::::::::::::::::::::::
XP_016 MKLCIEHVFNIIGAFDIPRFVYNSERKKFLPLLM
10 20 30
120 130 140 150 160 170
pF1KB9 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB9 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB9 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB9 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB9 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV
340 350 360 370 380 390
480 490 500 510 520
pF1KB9 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
400 410 420 430 440 450
>>XP_011535145 (OMIM: 602670) PREDICTED: DNA polymerase (469 aa)
initn: 3017 init1: 3017 opt: 3017 Z-score: 3554.0 bits: 667.1 E(85289): 3.2e-191
Smith-Waterman score: 3017; 100.0% identity (100.0% similar) in 440 aa overlap (82-521:5-444)
60 70 80 90 100 110
pF1KB9 VEKQPLSSNMIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLM
::::::::::::::::::::::::::::::
XP_011 MKLCIEHVFNIIGAFDIPRFVYNSERKKFLPLLM
10 20 30
120 130 140 150 160 170
pF1KB9 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB9 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB9 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB9 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB9 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV
340 350 360 370 380 390
480 490 500 510 520
pF1KB9 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDRSRTVFWGKS
400 410 420 430 440 450
XP_011 QASCGGELVLLQANS
460
>>NP_001184259 (OMIM: 602670) DNA polymerase epsilon sub (501 aa)
initn: 3350 init1: 2873 opt: 2873 Z-score: 3383.9 bits: 635.7 E(85289): 9.5e-182
Smith-Waterman score: 3302; 95.1% identity (95.1% similar) in 527 aa overlap (1-527:1-501)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
:::::::::::::::::::::: ::::::::::::
NP_001 MIERSVVEAAVQECSQSVDETI--------------------------LLMTNHPAPNLF
70 80 90
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
400 410 420 430 440 450
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
460 470 480 490 500
>>XP_011535144 (OMIM: 602670) PREDICTED: DNA polymerase (520 aa)
initn: 3311 init1: 2834 opt: 2834 Z-score: 3337.8 bits: 627.2 E(85289): 3.6e-179
Smith-Waterman score: 3263; 95.0% identity (95.0% similar) in 521 aa overlap (1-521:1-495)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
:::::::::::::::::::::: ::::::::::::
XP_011 MIERSVVEAAVQECSQSVDETI--------------------------LLMTNHPAPNLF
70 80 90
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
400 410 420 430 440 450
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::::::::::::::::::::::::
XP_011 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDRSRTVFWGKSQASCGGELV
460 470 480 490 500 510
XP_011 LLQANS
520
>>XP_011535146 (OMIM: 602670) PREDICTED: DNA polymerase (265 aa)
initn: 1641 init1: 1641 opt: 1645 Z-score: 1941.4 bits: 367.9 E(85289): 2.1e-101
Smith-Waterman score: 1645; 96.9% identity (98.9% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
:::::::::::: . .. :..
XP_011 GFPPTEPSSTTRLFTSTSNLLYSVW
250 260
527 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:23:31 2016 done: Sun Nov 6 12:23:33 2016
Total Scan time: 8.700 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]