Result of FASTA (ccds) for
pFN21AB9759
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9759, 714 aa
1>>>pF1KB9759 714 - 714 aa - 714 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.6357+/-0.00104; mu= -10.8402+/- 0.062
mean_var=523.8444+/-111.241, 0's: 0 Z-trim(117.8): 820 B-trim: 174 in 1/53
Lambda= 0.056037
statistics sampled from 17708 (18618) to 17708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.572), width: 16
Scan time: 3.980
The best scores are: opt bits E(32554)
CCDS42230.1 HIC1 gene_id:3090|Hs108|chr17 ( 714) 4995 418.6 1.6e-116
CCDS42229.1 HIC1 gene_id:3090|Hs108|chr17 ( 733) 4995 418.6 1.7e-116
CCDS13789.1 HIC2 gene_id:23119|Hs108|chr22 ( 615) 1566 141.3 4.2e-33
>>CCDS42230.1 HIC1 gene_id:3090|Hs108|chr17 (714 aa)
initn: 4995 init1: 4995 opt: 4995 Z-score: 2205.2 bits: 418.6 E(32554): 1.6e-116
Smith-Waterman score: 4995; 100.0% identity (100.0% similar) in 714 aa overlap (1-714:1-714)
10 20 30 40 50 60
pF1KB9 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 NLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLCGLDLSKKSPPGSAAPERPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLCGLDLSKKSPPGSAAPERPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 AERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGPEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGPEPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGLAPPPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGLAPPPR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 YPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 IPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTH
610 620 630 640 650 660
670 680 690 700 710
pF1KB9 FLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAAGPDGRTIDRFSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAAGPDGRTIDRFSPT
670 680 690 700 710
>>CCDS42229.1 HIC1 gene_id:3090|Hs108|chr17 (733 aa)
initn: 4995 init1: 4995 opt: 4995 Z-score: 2205.1 bits: 418.6 E(32554): 1.7e-116
Smith-Waterman score: 4995; 100.0% identity (100.0% similar) in 714 aa overlap (1-714:20-733)
10 20 30 40
pF1KB9 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRA
:::::::::::::::::::::::::::::::::::::::::
CCDS42 MTFPEADILLKSGECAGQTMLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 HKNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HKNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 GAEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GAEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 ATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLC
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 GLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEA
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 APPSDPFRGGSGSPGPEPPGRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 APPSDPFRGGSGSPGPEPPGRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERG
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 GDAAVSPGGPPLGLAPPPRYPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GDAAVSPGGPPLGLAPPPRYPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYP
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 CPHLAYGEPESFGDNLYVCIPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CPHLAYGEPESFGDNLYVCIPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAA
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB9 GLGPPFGGGGDKVAGAPGGLGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GLGPPFGGGGDKVAGAPGGLGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTIC
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB9 GKKFTQRGTMTRHMRSHLGLKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GKKFTQRGTMTRHMRSHLGLKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKF
550 560 570 580 590 600
590 600 610 620 630 640
pF1KB9 AQQRNLISHMKMHAVGGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AQQRNLISHMKMHAVGGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQL
610 620 630 640 650 660
650 660 670 680 690 700
pF1KB9 SLKQQDKAAAAELLAQTTHFLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLKQQDKAAAAELLAQTTHFLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAA
670 680 690 700 710 720
710
pF1KB9 GPDGRTIDRFSPT
:::::::::::::
CCDS42 GPDGRTIDRFSPT
730
>>CCDS13789.1 HIC2 gene_id:23119|Hs108|chr22 (615 aa)
initn: 1386 init1: 741 opt: 1566 Z-score: 707.9 bits: 141.3 E(32554): 4.2e-33
Smith-Waterman score: 1629; 47.8% identity (64.8% similar) in 630 aa overlap (1-594:19-611)
10 20 30 40
pF1KB9 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAH
: :: :.::.:::::::.::::::::::::.:.:..::::
CCDS13 MVSGPLALRWCAWAGRGDMGPDMELPSHSKQLLLQLNQQRTKGFLCDVIIMVENSIFRAH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 KNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPG
:::::::: :.::::.::::.::: :::: .::. .:::::::.: . . :
CCDS13 KNVLAASSIYFKSLVLHDNLINLDTDMVSSTVFQQILDFIYTGKLLPSDQ--------P-
70 80 90 100 110
110 120 130 140 150 160
pF1KB9 AEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAA
:::.....:.::::::.:.:.:::...::: :: :.: .: . .::: :. : .
CCDS13 AEPNFSTLLTAASYLQLPELAALCRRKLKRAGKPF-----GSGRAGSTGMGRPPRSQRLS
120 130 140 150 160
170 180 190 200
pF1KB9 TP-VIQACYPSPV----GPPPPPAAEPPSGPEAAV-----NTHCAELYASGPGPA---AA
: :::: : . : : : .: . . : .. . . :: :.
CCDS13 TASVIQARYQGLVDGRKGAHAPQELPQAKGSDDELFLGGSNQDSVQGLGRAVCPAGGEAG
170 180 190 200 210 220
210 220 230 240 250
pF1KB9 L--CASERR-----CSPLCGLDLSKKSPPGSAAPERP---------LAEREL--PPRPDS
: :.: : :::::::::: : : :.. . :: ..
CCDS13 LGGCSSSTNGSSGGCEQELGLDLSKKSPPLPPATPGPHLTPDDAAQLSDSQHGSPPAASA
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB9 PPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGPEPPGRPDGPSLLYR
:: :. :.:.: : . : :.. :: : : . .:: .: . .
CCDS13 PPVANSASYSE----LGGTPDEPMD-LEGAE---DNHLSLLEAPGGQPRKSLRHSTRKKE
290 300 310 320 330
320 330 340 350 360
pF1KB9 WMKHEPGLGSYGD--ELGRERGSPSERCE---ERGGDAAVSPGGPPLGLAPPPRYPGSLD
: :.:: :: . : : . :.:. : .: .. .. :. : : : :: . .
CCDS13 WGKKEPVAGSPFERREAGPKGPCPGEEGEGVGDRVPNGILASGAGPSGPYGEPPYPCKEE
340 350 360 370 380 390
370 380 390 400 410 420
pF1KB9 GPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVCIPCGKG
.. ..: .:. : ::.. . . ::: : :.::::::::::.::
CCDS13 EENGKDASEDSAQSGSEGGSGHASAHYMYRQEGY--------ETVSYGDNLYVCIPCAKG
400 410 420 430 440 450
430 440 450 460 470 480
pF1KB9 FPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGGLGELLR
::::::::::::.:.::: :. . :.: .: : . : : . . .: :
CCDS13 FPSSEQLNAHVETHTEEE--LFIKEEGAY----ETGSGGAEEEAEDLSAPSAAYTAEP-R
460 470 480 490 500
490 500 510 520 530 540
pF1KB9 PYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLGLKPFAC
:..:. :.:.:::::::::::::::::::.::.:::: ::::::::::::::::::::::
CCDS13 PFKCSVCEKTYKDPATLRQHEKTHWLTRPFPCNICGKMFTQRGTMTRHMRSHLGLKPFAC
510 520 530 540 550 560
550 560 570 580 590 600
pF1KB9 DACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAAGAAGAL
: ::::::::::::::::.::::::::::.:::::.::::::::..::
CCDS13 DECGMRFTRQYRLTEHMRVHSGEKPYECQLCGGKFTQQRNLISHLRMHTSPS
570 580 590 600 610
610 620 630 640 650 660
pF1KB9 AGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTHFLHDPK
714 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:45:08 2016 done: Sun Nov 6 20:45:09 2016
Total Scan time: 3.980 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]