Result of FASTA (ccds) for
pFN21AB9724
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9724, 418 aa
1>>>pF1KB9724 418 - 418 aa - 418 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3927+/-0.00129; mu= 3.2094+/- 0.078
mean_var=460.1851+/-96.375, 0's: 0 Z-trim(114.0): 78 B-trim: 151 in 1/51
Lambda= 0.059787
statistics sampled from 14514 (14575) to 14514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.448), width: 16
Scan time: 2.980
The best scores are: opt bits E(32554)
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 ( 419) 2817 257.2 2.1e-68
CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 ( 409) 1028 102.9 5.9e-22
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 ( 338) 996 100.0 3.6e-21
CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 ( 451) 631 68.7 1.3e-11
>>CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 (419 aa)
initn: 2170 init1: 2170 opt: 2817 Z-score: 1341.5 bits: 257.2 E(32554): 2.1e-68
Smith-Waterman score: 2817; 99.8% identity (99.8% similar) in 419 aa overlap (1-418:1-419)
10 20 30 40 50 60
pF1KB9 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHH-QALEPGDLLDHI
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS31 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEPGDLLDHI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 GLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 VGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRT
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB9 SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY
370 380 390 400 410
>>CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 (409 aa)
initn: 1166 init1: 964 opt: 1028 Z-score: 507.6 bits: 102.9 E(32554): 5.9e-22
Smith-Waterman score: 1292; 58.7% identity (67.6% similar) in 414 aa overlap (29-416:84-407)
10 20 30 40 50
pF1KB9 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARA
:::.::::::::: ::.:..:::.:::::
CCDS34 GGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPP--SNIFGGLDESLLARA
60 70 80 90 100 110
60 70 80 90 100
pF1KB9 EALAAVDIAVSQGKSH--------PFKPDATYHTMNSVPCTS---TSTVPLAH-------
:::::::: :::.::: ::::::::::::..:::: .:.::..:
CCDS34 EALAAVDI-VSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPSALAGT
120 130 140 150 160 170
110 120 130 140 150
pF1KB9 HHHHHHH--------QALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGP
::::::: :::: :.::.:.: :.::: :: ::
CCDS34 HHHHHHHHHHHHQPHQALE-GELLEHLS-PGLAL-------GAMAG--------------
180 190 200
160 170 180 190 200 210
pF1KB9 GGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSG
: :.... :: ::: ... . . :: .: :
CCDS34 ------------------------PDGAVVSTPAHA-PHMATMNPMHQ--AALSMAHAHG
210 220 230 240
220 230 240 250 260 270
pF1KB9 LPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAE
:: .: : . : :.:::.::::::
CCDS34 LP--------SHMGC-----------------------------MSDVDADPRDLEAFAE
250 260
280 290 300 310 320 330
pF1KB9 RFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWL
270 280 290 300 310 320
340 350 360 370 380 390
pF1KB9 EEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLD
:::: ..:::..:::::::.::::::::::::::::::::::.:::::::::::::::::
CCDS34 EEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLD
330 340 350 360 370 380
400 410
pF1KB9 LKKNVVRVWFCNQRQKQKRMKFSATY
:::::::::::::::::::::.::
CCDS34 LKKNVVRVWFCNQRQKQKRMKYSAGI
390 400
>>CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 (338 aa)
initn: 1298 init1: 945 opt: 996 Z-score: 493.6 bits: 100.0 E(32554): 3.6e-21
Smith-Waterman score: 1447; 60.5% identity (71.8% similar) in 425 aa overlap (1-418:1-338)
10 20 30 40 50 60
pF1KB9 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA
::.:::::: :.:::.: : :. ::::.:::.::.:::.: ::.:.:.:.::.:::::::
CCDS42 MMAMNSKQP-FGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEA
10 20 30 40 50
70 80 90 100 110
pF1KB9 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTS-TVPLAH------HHHHHHHQALEPG
:::::: ::.::.::::::::::::.:::::::: :::..: : :: ::.:: :
CCDS42 LAAVDI-VSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLE-G
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 DLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGG
:::.::: :.:.. .:
CCDS42 DLLEHIS-PTLSV---------------------------------------------SG
120 130
180 190 200 210 220 230
pF1KB9 GGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAA
:.: ... .. ::: :. ..::: : : :. :: :: :.: :
CCDS42 LGAPEHSVMPAQIHPH-HLGAMGHL-HQAM--------GMSHPHTVAP---HSAMPAC--
140 150 160 170
240 250 260 270 280 290
pF1KB9 AAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALA
. : ..:::::::::::::::::::::::::::.:::
CCDS42 -----------------------LSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALA
180 190 200 210
300 310 320 330 340 350
pF1KB9 NLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGE
:::::::::::::::::::::::::::::::::.:::::::::.: ::: .:::::::.:
CCDS42 NLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSE
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB9 KKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK
.::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS42 RKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK
280 290 300 310 320 330
pF1KB9 FSATY
.::..
CCDS42 YSAVH
>>CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 (451 aa)
initn: 598 init1: 369 opt: 631 Z-score: 322.2 bits: 68.7 E(32554): 1.3e-11
Smith-Waterman score: 673; 44.2% identity (68.5% similar) in 292 aa overlap (129-416:120-401)
100 110 120 130 140 150
pF1KB9 AHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAA-AGGGGAHD-GPGGGGGPGGGG
::. :::: : :. :: ::. . .::..:
CCDS30 LEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGPAMSPSPGASG
90 100 110 120 130 140
160 170 180 190 200 210
pF1KB9 GPGGGPGG--GGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLP
: : : . .. ::::::: .: : .:.. : .: : : . :. :: :
CCDS30 GHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLH---HALHEDGHEAQLEPSPPP
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB9 HPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAERF
: : . : :. :.. :::: .:..... :: . . .:: .:: ::..:
CCDS30 HLGAHGHAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAPSSD----DLEQFAKQF
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB9 KQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEE
:::::::: :::::: ::..: : . .::.::::::.: :: .:: :::.:. ::::
CCDS30 KQRRIKLGFTQADVGLALGTLY--G-NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEE
270 280 290 300 310
340 350 360 370 380 390
pF1KB9 AEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLK
..... : .. :.:..::::: . : .::..: :.::...:...:..:.:.
CCDS30 TDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLE
320 330 340 350 360 370
400 410
pF1KB9 KNVVRVWFCNQRQKQKRMKFSATY
:.::::::::.:::.::: .:
CCDS30 KEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSAPPPPPPAALH
380 390 400 410 420 430
418 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:45:34 2016 done: Tue Nov 8 07:45:34 2016
Total Scan time: 2.980 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]