Result of FASTA (ccds) for
pFN21AB9722
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9722, 410 aa
1>>>pF1KB9722 410 - 410 aa - 410 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9914+/-0.00109; mu= 3.9713+/- 0.066
mean_var=362.9935+/-75.849, 0's: 0 Z-trim(114.2): 46 B-trim: 0 in 0/51
Lambda= 0.067317
statistics sampled from 14754 (14791) to 14754 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.454), width: 16
Scan time: 2.370
The best scores are: opt bits E(32554)
CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 ( 409) 2750 280.8 1.7e-75
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 ( 338) 1208 130.9 1.8e-30
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 ( 419) 1028 113.5 3.7e-25
CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 ( 443) 657 77.5 2.7e-14
CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 ( 438) 544 66.6 5.4e-11
CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 ( 436) 542 66.4 6.1e-11
>>CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 (409 aa)
initn: 2438 init1: 2438 opt: 2750 Z-score: 1469.1 bits: 280.8 E(32554): 1.7e-75
Smith-Waterman score: 2750; 99.8% identity (99.8% similar) in 410 aa overlap (1-410:1-409)
10 20 30 40 50 60
pF1KB9 MMMMSLNSKQAFSMPHGGSLHVEPKYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MMMMSLNSKQAFSMPHGGSLHVEPKYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDI
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGGGGGGG-RSSSSSSSGSSGGGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDI
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 VSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHH
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 HHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATMNPMHQAALSMAHAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATMNPMHQAALSMAHAH
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 GLPSHMGCMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GLPSHMGCMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTI
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 CRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRS
300 310 320 330 340 350
370 380 390 400 410
pF1KB9 LEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAGI
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAGI
360 370 380 390 400
>>CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 (338 aa)
initn: 1377 init1: 979 opt: 1208 Z-score: 660.6 bits: 130.9 E(32554): 1.8e-30
Smith-Waterman score: 1506; 70.7% identity (86.3% similar) in 335 aa overlap (79-408:22-336)
50 60 70 80 90 100
pF1KB9 SSSNAGGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPP--SNIFGGLDE
:: .:::::::.:::.: .::::..::
CCDS42 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDE
10 20 30 40 50
110 120 130 140 150 160
pF1KB9 SLLARAEALAAVDIVSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPS
::::::::::::::::..:.: :::::::::::...:::: .::.::::::.
CCDS42 SLLARAEALAAVDIVSHGKNH--------PFKPDATYHTMSSVPCTS--TSSTVPISHPA
60 70 80 90 100
170 180 190 200 210 220
pF1KB9 ALAGTHHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATM
::.. : :: ::.:::.::::.:: :.......:. .:. . : :...:
CCDS42 ALTS---------HPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAM
110 120 130 140 150
230 240 250 260 270 280
pF1KB9 NPMHQAALSMAHAHGLPSHMG---CMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSA
. .::: ..:.: : . : . :.:::..:::.:::::::::::::::::::::::.:
CCDS42 GHLHQA-MGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB9 LANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNG
:::::::::::::::::::::::::::::::::::.::::::::: ..::: .:::::::
CCDS42 LANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNG
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB9 AEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
.:.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
280 290 300 310 320 330
410
pF1KB9 MKYSAGI
:::::
CCDS42 MKYSAVH
>>CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 (419 aa)
initn: 1176 init1: 964 opt: 1028 Z-score: 565.1 bits: 113.5 E(32554): 3.7e-25
Smith-Waterman score: 1304; 58.9% identity (67.9% similar) in 414 aa overlap (85-408:29-417)
60 70 80 90 100 110
pF1KB9 GGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPP--SNIFGGLDESLLARA
:::.::::::::: ::.:..:::.:::::
CCDS31 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARA
10 20 30 40 50
120 130 140 150 160 170
pF1KB9 EALAAVDI-VSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPSALAGT
:::::::: :::.::: ::::::::::::..:::: .:.::..:
CCDS31 EALAAVDIAVSQGKSH--------PFKPDATYHTMNSVPCTS---TSTVPLAH-------
60 70 80 90 100
180 190 200
pF1KB9 HHHHHHHHHHHHQPHQALE-GELLEHLS-PGLAL-------GAMAG--------------
::::::: ::::: :.::.:.: :.::: :: ::
CCDS31 -----HHHHHHH--HQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGP
110 120 130 140 150
210 220 230 240
pF1KB9 ------------------------PDGAVVSTPAHA-PHMATMNPMHQ--AALSMAHAHG
: :.... :: ::: ... . . :: .: :
CCDS31 GGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSG
160 170 180 190 200 210
250 260
pF1KB9 LP--------SHMGC-----------------------------MSDVDADPRDLEAFAE
:: .: : . : :.:::.::::::
CCDS31 LPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAE
220 230 240 250 260 270
270 280 290 300 310 320
pF1KB9 RFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWL
280 290 300 310 320 330
330 340 350 360 370 380
pF1KB9 EEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLD
:::: ..:::..:::::::.::::::::::::::::::::::.:::::::::::::::::
CCDS31 EEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLD
340 350 360 370 380 390
390 400 410
pF1KB9 LKKNVVRVWFCNQRQKQKRMKYSAGI
:::::::::::::::::::::.::
CCDS31 LKKNVVRVWFCNQRQKQKRMKFSATY
400 410
>>CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 (443 aa)
initn: 621 init1: 368 opt: 657 Z-score: 370.1 bits: 77.5 E(32554): 2.7e-14
Smith-Waterman score: 663; 35.2% identity (59.6% similar) in 406 aa overlap (22-409:41-417)
10 20 30 40 50
pF1KB9 MMMMSLNSKQAFSMPHGGSLHVEPKYSALHSTSPGSSAPIAPSASSPSSSS
:. :.::.: .. :.. . . .. :
CCDS50 LLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQS----NGHPLSHAHQWITALS
20 30 40 50 60
60 70 80 90 100
pF1KB9 NAGGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPPSNIF--GGLDESL-
..:::::::::::::::: .....: :.. :. .. :: . :: . :
CCDS50 HGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIK-------PSVVVQQGGRGDELH
70 80 90 100 110
110 120 130 140 150 160
pF1KB9 ----LARAEALAAVDIVSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISH
: . . . .:....... .. : : ..:. : : .: :...
CCDS50 GPGALQQQHQQQQQQQQQQQQQQQQQQQQQRP--PHLVHHAANHHPGPGAWRSAAAAAHL
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 PSALAGTHHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMA
: ...... . :: ...: : : : : :: . :: :
CCDS50 PPSMGASNGGLLYS-----QPSFTVNGML------G-AGGQPAGLHHHGLRDAHDEPHHA
180 190 200 210 220
230 240 250 260 270
pF1KB9 TMNPM-----HQAALSMAHAHGLPSHMGCMSDVDAD---PR--DLEAFAERFKQRRIKLG
.: :: .: :.: : : .: : ::: ::..:::::::::
CCDS50 DHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLG
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB9 VTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHRE
:::::: ::..: :.. ::.::::::.: :: .:: :::.:. :::::..:
CCDS50 FTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGS
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB9 KLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVW
. .. ..:..::::: . : .::..: :.::...:...:..:.:.:.:::::
CCDS50 PTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVW
350 360 370 380 390 400
400 410
pF1KB9 FCNQRQKQKRMKYSAGI
:::.:::.::: .:
CCDS50 FCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ
410 420 430 440
>>CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 (438 aa)
initn: 493 init1: 216 opt: 544 Z-score: 310.9 bits: 66.6 E(32554): 5.4e-11
Smith-Waterman score: 544; 35.9% identity (64.1% similar) in 351 aa overlap (68-404:9-341)
40 50 60 70 80 90
pF1KB9 APIAPSASSPSSSSNAGGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPP
:::. . :.. .. : : . . :
CCDS58 MESPRTAKGGRDIKMSGDVAD----STDARSTLSQVEP
10 20 30
100 110 120 130 140 150
pF1KB9 SNIFGGLDESLLARAEALAAVDIVSQSKSHHHHPPHHS--PFKPDATYHT-MNTIPCTSA
.: .::: . ..: :. : ..:. ::. : : : : ... . .:. :: .
CCDS58 GNDRNGLDFNRQIKTEDLS--DSLQQTLSHR--PCHLSQGPAMMSGNQMSGLNASPCQDM
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB9 ASSSSVPISHPSALAGTHHHHHHHHHHHHQP-HQALEGELLE--HLSPGLALGAMAGPDG
:: :... . : . . . :: .:.:. .:: . . :: : ..:: :
CCDS58 ASLH--PLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQSGLLL-PQTGP-G
100 110 120 130 140
220 230 240 250 260
pF1KB9 AVVSTPAHAPHM--ATMNPMHQAALSMAHAHGLPSHMGCMSDVDADPRDLEAFAERFKQR
. .. .: : . ....: .:. . . ::: : .: .: ..:: ::. ::::
CCDS58 LASQAFGH-PGLPGSSLEPHLEASQHLPVPKHLPSSGG--ADEPSDLEELEKFAKTFKQR
150 160 170 180 190 200
270 280 290 300 310 320
pF1KB9 RIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEK
::::: ::.::: :.. :. : ...::.:: :::.:.:: .:: :::.:. ::..::.
CCDS58 RIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAES
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB9 SHRE-KLTKPELFNG-----AEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKL
: . ... : . . ..:..::::: . . .:: : .:.::::.:. :::.:
CCDS58 SPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQL
270 280 290 300 310 320
390 400 410
pF1KB9 DLKKNVVRVWFCNQRQKQKRMKYSAGI
...:.::::::::.:::.::.
CCDS58 SMEKEVVRVWFCNRRQKEKRINCPVATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGT
330 340 350 360 370 380
>>CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 (436 aa)
initn: 493 init1: 216 opt: 542 Z-score: 309.9 bits: 66.4 E(32554): 6.1e-11
Smith-Waterman score: 542; 37.3% identity (65.5% similar) in 322 aa overlap (97-404:32-339)
70 80 90 100 110 120
pF1KB9 GGGRSSSSSSSGSSGGGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDIVSQSKS
:.: .::: . ..: :. : ..:. :
CCDS84 VNLESMHTDIKMSGDVADSTDARSTLSQVEPGNDRNGLDFNRQIKTEDLS--DSLQQTLS
10 20 30 40 50
130 140 150 160 170 180
pF1KB9 HHHHPPHHS--PFKPDATYHT-MNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHH
: .: : : : ... . .:. :: . :: :... . : . . .
CCDS84 H--RPCHLSQGPAMMSGNQMSGLNASPCQDMASLH--PLQQLVLVPGHLQSVSQFLLSQT
60 70 80 90 100 110
190 200 210 220 230
pF1KB9 QP-HQALEGELLE--HLSPGLALGAMAGPDGAVVSTPAHAPHM--ATMNPMHQAALSMAH
:: .:.:. .:: . . :: : ..:: : . .. .: : . ....: .:. .
CCDS84 QPGQQGLQPNLLPFPQQQSGLLL-PQTGP-GLASQAFGH-PGLPGSSLEPHLEASQHLPV
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB9 AHGLPSHMGCMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQS
. ::: : .: .: ..:: ::. ::::::::: ::.::: :.. :. : ...::.
CCDS84 PKHLPSSGG--ADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQT
180 190 200 210 220
300 310 320 330 340 350
pF1KB9 TICRFESLTLSHNNMIALKPILQAWLEEAEKSHRE-KLTKPELFNG-----AEKKRKRTS
:: :::.:.:: .:: :::.:. ::..::.: . ... : . . ..:..::::
CCDS84 TISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTS
230 240 250 260 270 280
360 370 380 390 400 410
pF1KB9 IAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAGI
: . . .:: : .:.::::.:. :::.:...:.::::::::.:::.::.
CCDS84 IETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPI
290 300 310 320 330 340
CCDS84 KPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQ
350 360 370 380 390 400
410 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:27:39 2016 done: Tue Nov 8 04:27:39 2016
Total Scan time: 2.370 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]