FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9706, 338 aa
  1>>>pF1KB9706 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3087+/-0.00103; mu= 0.4383+/- 0.063
 mean_var=544.7761+/-110.757, 0's: 0 Z-trim(118.2): 75  B-trim: 0 in 0/55
 Lambda= 0.054950
 statistics sampled from 19052 (19127) to 19052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.588), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS2265.1 HOXD11 gene_id:3237|Hs108|chr2          ( 338) 2388 202.9 3.1e-52


>>CCDS2265.1 HOXD11 gene_id:3237|Hs108|chr2               (338 aa)
 initn: 2388 init1: 2388 opt: 2388  Z-score: 1051.4  bits: 202.9 E(32554): 3.1e-52
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB9 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS
              250       260       270       280       290       300

              310       320       330        
pF1KB9 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
       ::::::::::::::::::::::::::::::::::::::
CCDS22 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
              310       320       330        




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:26:27 2016 done: Tue Nov  8 04:26:28 2016
 Total Scan time:  2.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]