FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9686, 199 aa
  1>>>pF1KB9686 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3452+/-0.000667; mu= 10.5523+/- 0.040
 mean_var=123.4468+/-24.954, 0's: 0 Z-trim(114.7): 50  B-trim: 0 in 0/52
 Lambda= 0.115434
 statistics sampled from 15255 (15305) to 15255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20         ( 199) 1339 232.8   1e-61
CCDS43779.1 SCX gene_id:642658|Hs108|chr8          ( 201)  520 96.4 1.2e-20


>>CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20              (199 aa)
 initn: 1339 init1: 1339 opt: 1339  Z-score: 1221.3  bits: 232.8 E(32554): 1e-61
Smith-Waterman score: 1339; 99.5% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KB9 MAFALLRPVGAHVLYPDVRLLSEDEENRSESDASDQSFGCCEGPEAARRGPGPGGGRRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAFALLRPVGAHVLYPDVRLLSEDEENRSESDASDQSFGCCEGPEAARRGPGPGGGRRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS33 GGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETVRLASSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSICTFCLSNQRKGGGRRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSICTFCLSNQRKGGGRRD
              130       140       150       160       170       180

              190         
pF1KB9 LGGSCLKVRGVAPLRGPRR
       :::::::::::::::::::
CCDS33 LGGSCLKVRGVAPLRGPRR
              190         

>>CCDS43779.1 SCX gene_id:642658|Hs108|chr8               (201 aa)
 initn: 513 init1: 413 opt: 520  Z-score: 484.1  bits: 96.4 E(32554): 1.2e-20
Smith-Waterman score: 616; 59.3% identity (73.4% similar) in 199 aa overlap (1-180:1-194)

               10         20        30        40              50   
pF1KB9 MAFALLRPVG-AHVLYPDVRLLSEDEENRSESDASDQSFGC------CEGPEAARRGPGP
       :.:: :::.  .. :::.:  :::::.  :.:..::..  :      : : ..:::    
CCDS43 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEK-PCRVHAARC-GLQGARRR---
               10        20        30         40         50        

            60         70        80        90       100       110  
pF1KB9 GGGRRAGGGGGAG-PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE
       .::::::::: .: :    :::..:::::::::.:::::::::::::::::.::::::::
CCDS43 AGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIE
          60        70        80        90       100       110     

            120       130       140               150          160 
pF1KB9 TLRLASSYIAHLANVLLLGDSADDGQPC------FRAA--GSAKGAVPA--AADG-GRQP
       :::::::::.::.:::: :..  :::::      :.::  ::     :   : :: . ::
CCDS43 TLRLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP
         120       130       140       150       160       170     

             170       180       190         
pF1KB9 RSICTFCLSNQRKGGGRRDLGGSCLKVRGVAPLRGPRR
       ..::::::::::: .  ::                   
CCDS43 KQICTFCLSNQRKLSKDRDRKTAIRS            
         180       190       200             




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:48:12 2016 done: Tue Nov  8 04:48:13 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]