FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9604, 376 aa
  1>>>pF1KB9604 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4170+/-0.00101; mu= -6.2691+/- 0.061
 mean_var=530.4880+/-108.826, 0's: 0 Z-trim(118.5): 73  B-trim: 192 in 1/54
 Lambda= 0.055685
 statistics sampled from 19413 (19486) to 19413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.599), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(32554)
CCDS3105.1 FOXL2 gene_id:668|Hs108|chr3            ( 376) 2703 230.9 1.4e-60
CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5          ( 465)  742 73.5 4.4e-13


>>CCDS3105.1 FOXL2 gene_id:668|Hs108|chr3                 (376 aa)
 initn: 2703 init1: 2703 opt: 2703  Z-score: 1200.9  bits: 230.9 E(32554): 1.4e-60
Smith-Waterman score: 2703; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB9 MMASYPEPEDAAGALLAPETGRTVKEPEGPPPSPGKGGGGGGGTAPEKPDPAQKPPYSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MMASYPEPEDAAGALLAPETGRTVKEPEGPPPSPGKGGGGGGGTAPEKPDPAQKPPYSYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPAHFQPGKGLFGAGGAAGGCGVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPAHFQPGKGLFGAGGAAGGCGVAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 AGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAGPGSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAGPGSPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 AAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHPHAHHLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHPHAHHLH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSY
              310       320       330       340       350       360

              370      
pF1KB9 WDHDSKTGALHSRLDL
       ::::::::::::::::
CCDS31 WDHDSKTGALHSRLDL
              370      

>>CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5               (465 aa)
 initn: 506 init1: 506 opt: 742  Z-score: 348.4  bits: 73.5 E(32554): 4.4e-13
Smith-Waterman score: 751; 42.4% identity (56.7% similar) in 363 aa overlap (7-355:70-422)

                                       10        20        30      
pF1KB9                         MMASYPEPEDAAGALLAPETGRTVKEPEGPPPSPGK
                                     : ::    :::: .: .   : :: :. : 
CCDS75 GGGGPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDILLAPPAGGS-PAPPGPAPAAGA
      40        50        60        70        80         90        

           40               50        60        70        80       
pF1KB9 G--GGGGGGTA-------PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAK
       :  :::::: :           .:  ::::::.:::.::: .: .:::::: : ..: ..
CCDS75 GAGGGGGGGGAGGGGSAGSGAKNPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGR
      100       110       120       130       140       150        

        90       100       110       120       130       140       
pF1KB9 FPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNY-RRR
       ::.:...  .::::::::::::.::.:.::: :.  :::::::::   :::..:.. :::
CCDS75 FPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRR
      160       170       180       190       200       210        

        150        160       170       180       190         200   
pF1KB9 RRMKR-PFRPPPAHFQPGKGLFGAGGAAGGCGVAGAGADGYGYLAPPKYLQSGF--LNNS
       .:.:: :. :: :    .  : ::: :::: :  .:.:  .    ::     :.   . .
CCDS75 KRFKRQPLLPPNAAAAESLLLRGAG-AAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCG
      220       230       240        250       260       270       

           210       220       230       240       250       260   
pF1KB9 WPLPQPPSPMPYASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYTRVQS
       . :  ::   : :    :::::::::    . :  :   ...  ::  : .: :.    .
CCDS75 YGLQLPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHP--LG
       280       290       300       310       320       330       

           270       280        290       300       310       320  
pF1KB9 MALPPGVVNSYNGLGGPPA-APPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQL
        :::  .  :    ::: : :    :       .  :  :::   :     : :   .: 
CCDS75 AALPGPLPASAAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAA-----AQAAAAAQA
         340       350       360       370       380            390

            330       340       350       360       370            
pF1KB9 SPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSYWDHDSKTGALHSRLDL      
       ::.   .::::::. .:. :     :  :  :.                           
CCDS75 SPSPSPVAAPPAPG-SSGGGCAAQAAVGPAAALTRSLVAAAAAAASSVSSSAALGTLHQG
              400        410       420       430       440         

CCDS75 TALSSVENFTARISNC
     450       460     




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:05:09 2016 done: Tue Nov  8 02:05:10 2016
 Total Scan time:  3.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]