Result of FASTA (omim) for
pFN21AB9455
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9455, 1454 aa
1>>>pF1KB9455 1454 - 1454 aa - 1454 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.9991+/-0.000446; mu= -6.9643+/- 0.028
mean_var=427.6614+/-90.684, 0's: 0 Z-trim(121.2): 20 B-trim: 42 in 1/56
Lambda= 0.062019
statistics sampled from 37560 (37580) to 37560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.441), width: 16
Scan time: 17.400
The best scores are: opt bits E(85289)
NP_004220 (OMIM: 300182) mediator of RNA polymeras (1454) 9762 889.3 0
XP_016885451 (OMIM: 300182) PREDICTED: mediator of (1338) 8997 820.8 0
XP_011542302 (OMIM: 300182) PREDICTED: mediator of (1338) 8997 820.8 0
XP_005272758 (OMIM: 300182) PREDICTED: mediator of (1338) 8997 820.8 0
>>NP_004220 (OMIM: 300182) mediator of RNA polymerase II (1454 aa)
initn: 9762 init1: 9762 opt: 9762 Z-score: 4738.0 bits: 889.3 E(85289): 0
Smith-Waterman score: 9762; 99.9% identity (100.0% similar) in 1454 aa overlap (1-1454:1-1454)
10 20 30 40 50 60
pF1KB9 MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 KLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 RTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 LSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTW
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 VAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECV
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 LEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 YQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 TFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYP
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_004 TFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 LTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 GASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPD
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB9 ASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB9 SYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQT
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB9 LQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIM
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB9 KLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEP
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB9 VSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVR
1390 1400 1410 1420 1430 1440
1450
pF1KB9 DLMANLTLPPGGRP
::::::::::::::
NP_004 DLMANLTLPPGGRP
1450
>>XP_016885451 (OMIM: 300182) PREDICTED: mediator of RNA (1338 aa)
initn: 8997 init1: 8997 opt: 8997 Z-score: 4368.6 bits: 820.8 E(85289): 0
Smith-Waterman score: 8997; 99.9% identity (100.0% similar) in 1338 aa overlap (117-1454:1-1338)
90 100 110 120 130 140
pF1KB9 QFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVH
::::::::::::::::::::::::::::::
XP_016 MISSFLDQQAILFVDTADRLASLARDALVH
10 20 30
150 160 170 180 190 200
pF1KB9 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB9 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB9 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB9 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB9 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC
280 290 300 310 320 330
450 460 470 480 490 500
pF1KB9 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK
340 350 360 370 380 390
510 520 530 540 550 560
pF1KB9 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY
400 410 420 430 440 450
570 580 590 600 610 620
pF1KB9 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK
460 470 480 490 500 510
630 640 650 660 670 680
pF1KB9 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK
520 530 540 550 560 570
690 700 710 720 730 740
pF1KB9 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY
580 590 600 610 620 630
750 760 770 780 790 800
pF1KB9 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR
640 650 660 670 680 690
810 820 830 840 850 860
pF1KB9 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV
700 710 720 730 740 750
870 880 890 900 910 920
pF1KB9 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI
760 770 780 790 800 810
930 940 950 960 970 980
pF1KB9 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS
820 830 840 850 860 870
990 1000 1010 1020 1030 1040
pF1KB9 PIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
XP_016 PIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN
880 890 900 910 920 930
1050 1060 1070 1080 1090 1100
pF1KB9 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA
940 950 960 970 980 990
1110 1120 1130 1140 1150 1160
pF1KB9 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ
1000 1010 1020 1030 1040 1050
1170 1180 1190 1200 1210 1220
pF1KB9 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ
1060 1070 1080 1090 1100 1110
1230 1240 1250 1260 1270 1280
pF1KB9 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE
1120 1130 1140 1150 1160 1170
1290 1300 1310 1320 1330 1340
pF1KB9 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA
1180 1190 1200 1210 1220 1230
1350 1360 1370 1380 1390 1400
pF1KB9 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN
1240 1250 1260 1270 1280 1290
1410 1420 1430 1440 1450
pF1KB9 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
1300 1310 1320 1330
>>XP_011542302 (OMIM: 300182) PREDICTED: mediator of RNA (1338 aa)
initn: 8997 init1: 8997 opt: 8997 Z-score: 4368.6 bits: 820.8 E(85289): 0
Smith-Waterman score: 8997; 99.9% identity (100.0% similar) in 1338 aa overlap (117-1454:1-1338)
90 100 110 120 130 140
pF1KB9 QFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVH
::::::::::::::::::::::::::::::
XP_011 MISSFLDQQAILFVDTADRLASLARDALVH
10 20 30
150 160 170 180 190 200
pF1KB9 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB9 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB9 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB9 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB9 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC
280 290 300 310 320 330
450 460 470 480 490 500
pF1KB9 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK
340 350 360 370 380 390
510 520 530 540 550 560
pF1KB9 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY
400 410 420 430 440 450
570 580 590 600 610 620
pF1KB9 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK
460 470 480 490 500 510
630 640 650 660 670 680
pF1KB9 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK
520 530 540 550 560 570
690 700 710 720 730 740
pF1KB9 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY
580 590 600 610 620 630
750 760 770 780 790 800
pF1KB9 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR
640 650 660 670 680 690
810 820 830 840 850 860
pF1KB9 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV
700 710 720 730 740 750
870 880 890 900 910 920
pF1KB9 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI
760 770 780 790 800 810
930 940 950 960 970 980
pF1KB9 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS
820 830 840 850 860 870
990 1000 1010 1020 1030 1040
pF1KB9 PIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
XP_011 PIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN
880 890 900 910 920 930
1050 1060 1070 1080 1090 1100
pF1KB9 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA
940 950 960 970 980 990
1110 1120 1130 1140 1150 1160
pF1KB9 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ
1000 1010 1020 1030 1040 1050
1170 1180 1190 1200 1210 1220
pF1KB9 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ
1060 1070 1080 1090 1100 1110
1230 1240 1250 1260 1270 1280
pF1KB9 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE
1120 1130 1140 1150 1160 1170
1290 1300 1310 1320 1330 1340
pF1KB9 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA
1180 1190 1200 1210 1220 1230
1350 1360 1370 1380 1390 1400
pF1KB9 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN
1240 1250 1260 1270 1280 1290
1410 1420 1430 1440 1450
pF1KB9 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
1300 1310 1320 1330
>>XP_005272758 (OMIM: 300182) PREDICTED: mediator of RNA (1338 aa)
initn: 8997 init1: 8997 opt: 8997 Z-score: 4368.6 bits: 820.8 E(85289): 0
Smith-Waterman score: 8997; 99.9% identity (100.0% similar) in 1338 aa overlap (117-1454:1-1338)
90 100 110 120 130 140
pF1KB9 QFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVH
::::::::::::::::::::::::::::::
XP_005 MISSFLDQQAILFVDTADRLASLARDALVH
10 20 30
150 160 170 180 190 200
pF1KB9 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB9 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB9 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB9 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB9 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC
280 290 300 310 320 330
450 460 470 480 490 500
pF1KB9 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK
340 350 360 370 380 390
510 520 530 540 550 560
pF1KB9 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY
400 410 420 430 440 450
570 580 590 600 610 620
pF1KB9 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK
460 470 480 490 500 510
630 640 650 660 670 680
pF1KB9 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK
520 530 540 550 560 570
690 700 710 720 730 740
pF1KB9 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY
580 590 600 610 620 630
750 760 770 780 790 800
pF1KB9 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR
640 650 660 670 680 690
810 820 830 840 850 860
pF1KB9 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV
700 710 720 730 740 750
870 880 890 900 910 920
pF1KB9 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI
760 770 780 790 800 810
930 940 950 960 970 980
pF1KB9 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS
820 830 840 850 860 870
990 1000 1010 1020 1030 1040
pF1KB9 PIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
XP_005 PIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN
880 890 900 910 920 930
1050 1060 1070 1080 1090 1100
pF1KB9 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA
940 950 960 970 980 990
1110 1120 1130 1140 1150 1160
pF1KB9 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ
1000 1010 1020 1030 1040 1050
1170 1180 1190 1200 1210 1220
pF1KB9 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ
1060 1070 1080 1090 1100 1110
1230 1240 1250 1260 1270 1280
pF1KB9 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE
1120 1130 1140 1150 1160 1170
1290 1300 1310 1320 1330 1340
pF1KB9 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA
1180 1190 1200 1210 1220 1230
1350 1360 1370 1380 1390 1400
pF1KB9 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN
1240 1250 1260 1270 1280 1290
1410 1420 1430 1440 1450
pF1KB9 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
1300 1310 1320 1330
1454 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:49:42 2016 done: Sun Nov 6 12:49:45 2016
Total Scan time: 17.400 Total Display time: 0.230
Function used was FASTA [36.3.4 Apr, 2011]