Result of FASTA (omim) for
pFN21AB9452
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9452, 519 aa
1>>>pF1KB9452 519 - 519 aa - 519 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1774+/-0.000375; mu= 9.7948+/- 0.023
mean_var=137.8137+/-26.611, 0's: 0 Z-trim(118.0): 7 B-trim: 0 in 0/52
Lambda= 0.109252
statistics sampled from 30478 (30485) to 30478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.357), width: 16
Scan time: 10.950
The best scores are: opt bits E(85289)
NP_036219 (OMIM: 604890) general transcription fac ( 519) 3506 564.3 3e-160
NP_001116295 (OMIM: 604890) general transcription ( 526) 3482 560.6 4.2e-159
XP_016870805 (OMIM: 604890) PREDICTED: general tra ( 472) 3176 512.3 1.3e-144
XP_016870804 (OMIM: 604890) PREDICTED: general tra ( 479) 3152 508.5 1.8e-143
XP_005272291 (OMIM: 604890) PREDICTED: general tra ( 537) 2644 428.5 2.4e-119
XP_011517503 (OMIM: 604890) PREDICTED: general tra ( 490) 2314 376.4 1e-103
NP_001273638 (OMIM: 604890) general transcription ( 345) 2221 361.7 2e-99
>>NP_036219 (OMIM: 604890) general transcription factor (519 aa)
initn: 3506 init1: 3506 opt: 3506 Z-score: 2998.0 bits: 564.3 E(85289): 3e-160
Smith-Waterman score: 3506; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)
10 20 30 40 50 60
pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL
430 440 450 460 470 480
490 500 510
pF1KB9 TYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
:::::::::::::::::::::::::::::::::::::::
NP_036 TYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
490 500 510
>>NP_001116295 (OMIM: 604890) general transcription fact (526 aa)
initn: 2796 init1: 2646 opt: 3482 Z-score: 2977.5 bits: 560.6 E(85289): 4.2e-159
Smith-Waterman score: 3482; 98.7% identity (98.7% similar) in 526 aa overlap (1-519:1-526)
10 20 30 40 50 60
pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
310 320 330 340 350 360
370 380 390 400 410
pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLK-------DSVYIFREGALPPYRQMFYQLCDL
::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_001 VTMHDLKQGLGPSGTSGARKPASSKYKLKVSLQTLRDSVYIFREGALPPYRQMFYQLCDL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB9 NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKA
430 440 450 460 470 480
480 490 500 510
pF1KB9 DGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
490 500 510 520
>>XP_016870805 (OMIM: 604890) PREDICTED: general transcr (472 aa)
initn: 3176 init1: 3176 opt: 3176 Z-score: 2717.5 bits: 512.3 E(85289): 1.3e-144
Smith-Waterman score: 3176; 100.0% identity (100.0% similar) in 468 aa overlap (52-519:5-472)
30 40 50 60 70 80
pF1KB9 RRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFST
::::::::::::::::::::::::::::::
XP_016 MTRAIYADPTKRLELYFRPKDPYCHPVCANRFST
10 20 30
90 100 110 120 130 140
pF1KB9 SSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB9 HTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISG
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB9 ENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB9 PIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDF
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB9 RIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKP
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB9 ASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLP
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB9 KTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDF
400 410 420 430 440 450
510
pF1KB9 KPSDGSENEMETEILDYV
::::::::::::::::::
XP_016 KPSDGSENEMETEILDYV
460 470
>>XP_016870804 (OMIM: 604890) PREDICTED: general transcr (479 aa)
initn: 2466 init1: 2316 opt: 3152 Z-score: 2696.9 bits: 508.5 E(85289): 1.8e-143
Smith-Waterman score: 3152; 98.5% identity (98.5% similar) in 475 aa overlap (52-519:5-479)
30 40 50 60 70 80
pF1KB9 RRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFST
::::::::::::::::::::::::::::::
XP_016 MTRAIYADPTKRLELYFRPKDPYCHPVCANRFST
10 20 30
90 100 110 120 130 140
pF1KB9 SSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB9 HTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISG
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB9 ENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB9 PIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDF
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB9 RIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKP
280 290 300 310 320 330
390 400 410 420 430
pF1KB9 ASSKYKLK-------DSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTE
:::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSKYKLKVSLQTLRDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTE
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB9 RDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEE
400 410 420 430 440 450
500 510
pF1KB9 EEEEEDFKPSDGSENEMETEILDYV
:::::::::::::::::::::::::
XP_016 EEEEEDFKPSDGSENEMETEILDYV
460 470
>>XP_005272291 (OMIM: 604890) PREDICTED: general transcr (537 aa)
initn: 2644 init1: 2644 opt: 2644 Z-score: 2263.5 bits: 428.5 E(85289): 2.4e-119
Smith-Waterman score: 2644; 98.7% identity (99.2% similar) in 396 aa overlap (1-396:1-396)
10 20 30 40 50 60
pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
::::::::::::::::::::::::::::: :. .:
XP_005 VTMHDLKQGLGPSGTSGARKPASSKYKLKVSLQTLRVRTRVQSPRAVCVGDIWRRGGDKS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL
XP_005 QGSLAPAAACGCPSRALWEPGPPLSHVTTPGMIGIGHTQEDRARAGHVGCSCGRSLTGSR
430 440 450 460 470 480
>>XP_011517503 (OMIM: 604890) PREDICTED: general transcr (490 aa)
initn: 2314 init1: 2314 opt: 2314 Z-score: 1982.9 bits: 376.4 E(85289): 1e-103
Smith-Waterman score: 2314; 98.6% identity (99.1% similar) in 345 aa overlap (52-396:5-349)
30 40 50 60 70 80
pF1KB9 RRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFST
::::::::::::::::::::::::::::::
XP_011 MTRAIYADPTKRLELYFRPKDPYCHPVCANRFST
10 20 30
90 100 110 120 130 140
pF1KB9 SSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB9 HTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISG
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB9 ENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB9 PIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDF
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB9 RIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKP
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB9 ASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLP
:::::::: :. .:
XP_011 ASSKYKLKVSLQTLRVRTRVQSPRAVCVGDIWRRGGDKSQGSLAPAAACGCPSRALWEPG
340 350 360 370 380 390
>>NP_001273638 (OMIM: 604890) general transcription fact (345 aa)
initn: 2221 init1: 2221 opt: 2221 Z-score: 1905.9 bits: 361.7 E(85289): 2e-99
Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 328 aa overlap (192-519:18-345)
170 180 190 200 210 220
pF1KB9 QELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNF
::::::::::::::::::::::::::::::
NP_001 MWLRCCRLWAARKASPGEGYNNPPISGENLIGLSRARRPHNAIFVNF
10 20 30 40
230 240 250 260 270 280
pF1KB9 EDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLK
50 60 70 80 90 100
290 300 310 320 330 340
pF1KB9 VLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAK
110 120 130 140 150 160
350 360 370 380 390 400
pF1KB9 RSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALP
170 180 190 200 210 220
410 420 430 440 450 460
pF1KB9 PYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRS
230 240 250 260 270 280
470 480 490 500 510
pF1KB9 KRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
290 300 310 320 330 340
519 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:54:39 2016 done: Sun Nov 6 01:54:40 2016
Total Scan time: 10.950 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]