FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9452, 519 aa
  1>>>pF1KB9452 519 - 519 aa - 519 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0818+/-0.000908; mu= 10.3057+/- 0.055
 mean_var=123.4468+/-24.128, 0's: 0 Z-trim(110.6): 10  B-trim: 455 in 1/50
 Lambda= 0.115434
 statistics sampled from 11754 (11758) to 11754 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.361), width:  16
 Scan time:  3.400

The best scores are:                                      opt bits E(32554)
CCDS6958.1 GTF3C5 gene_id:9328|Hs108|chr9          ( 519) 3506 595.1 6.2e-170
CCDS48050.1 GTF3C5 gene_id:9328|Hs108|chr9         ( 526) 3482 591.1  1e-168
CCDS75927.1 GTF3C5 gene_id:9328|Hs108|chr9         ( 345) 2221 381.0 1.2e-105


>>CCDS6958.1 GTF3C5 gene_id:9328|Hs108|chr9               (519 aa)
 initn: 3506 init1: 3506 opt: 3506  Z-score: 3164.3  bits: 595.1 E(32554): 6.2e-170
Smith-Waterman score: 3506; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)

               10        20        30        40        50        60
pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL
              430       440       450       460       470       480

              490       500       510         
pF1KB9 TYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
       :::::::::::::::::::::::::::::::::::::::
CCDS69 TYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
              490       500       510         

>>CCDS48050.1 GTF3C5 gene_id:9328|Hs108|chr9              (526 aa)
 initn: 2796 init1: 2646 opt: 3482  Z-score: 3142.7  bits: 591.1 E(32554): 1e-168
Smith-Waterman score: 3482; 98.7% identity (98.7% similar) in 526 aa overlap (1-519:1-526)

               10        20        30        40        50        60
pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL
              310       320       330       340       350       360

              370       380              390       400       410   
pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLK-------DSVYIFREGALPPYRQMFYQLCDL
       :::::::::::::::::::::::::::::       ::::::::::::::::::::::::
CCDS48 VTMHDLKQGLGPSGTSGARKPASSKYKLKVSLQTLRDSVYIFREGALPPYRQMFYQLCDL
              370       380       390       400       410       420

           420       430       440       450       460       470   
pF1KB9 NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKA
              430       440       450       460       470       480

           480       490       500       510         
pF1KB9 DGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
              490       500       510       520      

>>CCDS75927.1 GTF3C5 gene_id:9328|Hs108|chr9              (345 aa)
 initn: 2221 init1: 2221 opt: 2221  Z-score: 2010.4  bits: 381.0 E(32554): 1.2e-105
Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 328 aa overlap (192-519:18-345)

             170       180       190       200       210       220 
pF1KB9 QELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNF
                                     ::::::::::::::::::::::::::::::
CCDS75              MWLRCCRLWAARKASPGEGYNNPPISGENLIGLSRARRPHNAIFVNF
                            10        20        30        40       

             230       240       250       260       270       280 
pF1KB9 EDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLK
        50        60        70        80        90       100       

             290       300       310       320       330       340 
pF1KB9 VLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAK
       110       120       130       140       150       160       

             350       360       370       380       390       400 
pF1KB9 RSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALP
       170       180       190       200       210       220       

             410       420       430       440       450       460 
pF1KB9 PYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRS
       230       240       250       260       270       280       

             470       480       490       500       510         
pF1KB9 KRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV
       290       300       310       320       330       340     




519 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:54:38 2016 done: Sun Nov  6 01:54:39 2016
 Total Scan time:  3.400 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]