Result of FASTA (omim) for
pFN21AB9438
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9438, 183 aa
1>>>pF1KB9438 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0692+/-0.000412; mu= 13.9755+/- 0.025
mean_var=64.5460+/-13.648, 0's: 0 Z-trim(110.9): 17 B-trim: 1122 in 1/50
Lambda= 0.159639
statistics sampled from 19310 (19322) to 19310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.227), width: 16
Scan time: 4.990
The best scores are: opt bits E(85289)
NP_003317 (OMIM: 603594,608446) tumor necrosis fac ( 183) 1191 283.0 1.8e-76
XP_016857719 (OMIM: 603594,608446) PREDICTED: tumo ( 192) 1191 283.0 1.9e-76
XP_016857718 (OMIM: 603594,608446) PREDICTED: tumo ( 194) 1191 283.0 1.9e-76
XP_011508266 (OMIM: 603594,608446) PREDICTED: tumo ( 279) 1191 283.1 2.6e-76
NP_001284491 (OMIM: 603594,608446) tumor necrosis ( 133) 857 206.0 2e-53
XP_016857717 (OMIM: 603594,608446) PREDICTED: tumo ( 215) 859 206.6 2.2e-53
>>NP_003317 (OMIM: 603594,608446) tumor necrosis factor (183 aa)
initn: 1191 init1: 1191 opt: 1191 Z-score: 1493.8 bits: 283.0 E(85289): 1.8e-76
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF
130 140 150 160 170 180
pF1KB9 CVL
:::
NP_003 CVL
>>XP_016857719 (OMIM: 603594,608446) PREDICTED: tumor ne (192 aa)
initn: 1191 init1: 1191 opt: 1191 Z-score: 1493.4 bits: 283.0 E(85289): 1.9e-76
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:10-192)
10 20 30 40 50
pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MANQPMIVKMERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 VSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 EVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELI
130 140 150 160 170 180
180
pF1KB9 LIHQNPGEFCVL
::::::::::::
XP_016 LIHQNPGEFCVL
190
>>XP_016857718 (OMIM: 603594,608446) PREDICTED: tumor ne (194 aa)
initn: 1191 init1: 1191 opt: 1191 Z-score: 1493.4 bits: 283.0 E(85289): 1.9e-76
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:12-194)
10 20 30 40
pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSA
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRPSSANLIVKMERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 LQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 SQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGE
130 140 150 160 170 180
170 180
pF1KB9 LILIHQNPGEFCVL
::::::::::::::
XP_016 LILIHQNPGEFCVL
190
>>XP_011508266 (OMIM: 603594,608446) PREDICTED: tumor ne (279 aa)
initn: 1191 init1: 1191 opt: 1191 Z-score: 1491.1 bits: 283.1 E(85289): 2.6e-76
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:97-279)
10 20 30
pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASV
::::::::::::::::::::::::::::::
XP_011 FIHGKIMYGKNVKWKERRQGYPSASFLIVKMERVQPLEENVGNAARPRFERNKLLLVASV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB9 IQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQN
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB9 NSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVY
190 200 210 220 230 240
160 170 180
pF1KB9 LNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
:::::::::::::::::::::::::::::::::
XP_011 LNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
250 260 270
>>NP_001284491 (OMIM: 603594,608446) tumor necrosis fact (133 aa)
initn: 857 init1: 857 opt: 857 Z-score: 1080.0 bits: 206.0 E(85289): 2e-53
Smith-Waterman score: 857; 100.0% identity (100.0% similar) in 132 aa overlap (52-183:2-133)
30 40 50 60 70 80
pF1KB9 NKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQK
::::::::::::::::::::::::::::::
NP_001 MVSHRYPRIQSIKVQFTEYKKEKGFILTSQK
10 20 30
90 100 110 120 130 140
pF1KB9 EDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVA
40 50 60 70 80 90
150 160 170 180
pF1KB9 SLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
::::::::::::::::::::::::::::::::::::::::::
NP_001 SLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
100 110 120 130
>>XP_016857717 (OMIM: 603594,608446) PREDICTED: tumor ne (215 aa)
initn: 859 init1: 859 opt: 859 Z-score: 1079.5 bits: 206.6 E(85289): 2.2e-53
Smith-Waterman score: 859; 99.2% identity (100.0% similar) in 133 aa overlap (51-183:83-215)
30 40 50 60 70 80
pF1KB9 RNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQ
.:::::::::::::::::::::::::::::
XP_016 FLTPWDDKTQDTWLHSRLTDCTTALSRREQKVSHRYPRIQSIKVQFTEYKKEKGFILTSQ
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB9 KEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMV
120 130 140 150 160 170
150 160 170 180
pF1KB9 ASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
180 190 200 210
183 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:11:02 2016 done: Sun Nov 6 22:11:03 2016
Total Scan time: 4.990 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]