FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9428, 518 aa
  1>>>pF1KB9428 518 - 518 aa - 518 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6217+/-0.000978; mu= -0.4075+/- 0.057
 mean_var=373.6875+/-81.825, 0's: 0 Z-trim(114.0): 454  B-trim: 0 in 0/52
 Lambda= 0.066347
 statistics sampled from 14047 (14611) to 14047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.449), width:  16
 Scan time:  3.890

The best scores are:                                      opt bits E(32554)
CCDS9628.1 RIPK3 gene_id:11035|Hs108|chr14         ( 518) 3572 356.2 5.1e-98


>>CCDS9628.1 RIPK3 gene_id:11035|Hs108|chr14              (518 aa)
 initn: 3572 init1: 3572 opt: 3572  Z-score: 1873.2  bits: 356.2 E(32554): 5.1e-98
Smith-Waterman score: 3572; 100.0% identity (100.0% similar) in 518 aa overlap (1-518:1-518)

               10        20        30        40        50        60
pF1KB9 MSCVKLWPSGAPAPLVSIEELENQELVGKGGFGTVFRAQHRKWGYDVAVKIVNSKAISRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MSCVKLWPSGAPAPLVSIEELENQELVGKGGFGTVFRAQHRKWGYDVAVKIVNSKAISRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VKAMASLDNEFVLRLEGVIEKVNWDQDPKPALVTKFMENGSLSGLLQSQCPRPWPLLCRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VKAMASLDNEFVLRLEGVIEKVNWDQDPKPALVTKFMENGSLSGLLQSQCPRPWPLLCRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LKEVVLGMFYLHDQNPVLLHRDLKPSNVLLDPELHVKLADFGLSTFQGGSQSGTGSGEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LKEVVLGMFYLHDQNPVLLHRDLKPSNVLLDPELHVKLADFGLSTFQGGSQSGTGSGEPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GTLGYLAPELFVNVNRKASTASDVYSFGILMWAVLAGREVELPTEPSLVYEAVCNRQNRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GTLGYLAPELFVNVNRKASTASDVYSFGILMWAVLAGREVELPTEPSLVYEAVCNRQNRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SLAELPQAGPETPGLEGLKELMQLCWSSEPKDRPSFQECLPKTDEVFQMVENNMNAAVST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SLAELPQAGPETPGLEGLKELMQLCWSSEPKDRPSFQECLPKTDEVFQMVENNMNAAVST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 PRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLA
              430       440       450       460       470       480

              490       500       510        
pF1KB9 PSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK
       ::::::::::::::::::::::::::::::::::::::
CCDS96 PSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK
              490       500       510        




518 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:05:02 2016 done: Mon Nov  7 16:05:03 2016
 Total Scan time:  3.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]