Result of FASTA (omim) for
pFN21AB8983
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8983, 384 aa
1>>>pF1KB8983 384 - 384 aa - 384 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4827+/-0.000348; mu= -3.4274+/- 0.022
mean_var=360.3074+/-75.309, 0's: 0 Z-trim(125.8): 98 B-trim: 895 in 1/59
Lambda= 0.067567
statistics sampled from 50300 (50402) to 50300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.591), width: 16
Scan time: 10.760
The best scores are: opt bits E(85289)
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 2712 277.4 4e-74
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 683 79.6 1.5e-14
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 559 67.5 6e-11
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 441 56.1 1.9e-07
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 430 54.7 2.6e-07
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 435 55.5 2.9e-07
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 430 55.0 4.5e-07
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 422 54.1 5.5e-07
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 414 53.2 7.7e-07
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 414 53.5 1.2e-06
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 411 53.1 1.3e-06
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 404 52.3 1.8e-06
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 398 51.7 2.5e-06
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 369 49.1 2.6e-05
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 361 48.3 4.3e-05
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 341 46.2 0.00015
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 341 46.3 0.00016
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 341 46.5 0.00021
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 341 46.5 0.00021
NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 329 44.8 0.00022
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 341 46.5 0.00022
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 341 46.5 0.00023
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 341 46.5 0.00024
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 341 46.5 0.00024
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 341 46.5 0.00024
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 341 46.5 0.00024
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 341 46.5 0.00024
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 341 46.5 0.00024
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 341 46.5 0.00024
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 341 46.5 0.00024
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 341 46.6 0.00025
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 341 46.6 0.00025
NP_001139283 (OMIM: 607257) transcription factor S ( 801) 338 46.3 0.00031
NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 338 46.3 0.00031
NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 338 46.3 0.00031
NP_001139291 (OMIM: 607257) transcription factor S ( 841) 338 46.3 0.00032
>>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa)
initn: 2712 init1: 2712 opt: 2712 Z-score: 1451.8 bits: 277.4 E(85289): 4e-74
Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)
10 20 30 40 50 60
pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCP
310 320 330 340 350 360
370 380
pF1KB8 EESSLISALSDASSAVYYSACISG
::::::::::::::::::::::::
NP_060 EESSLISALSDASSAVYYSACISG
370 380
>>NP_071899 (OMIM: 610928,613674) transcription factor S (414 aa)
initn: 819 init1: 541 opt: 683 Z-score: 382.4 bits: 79.6 E(85289): 1.5e-14
Smith-Waterman score: 824; 44.9% identity (60.0% similar) in 390 aa overlap (23-346:3-380)
10 20 30 40 50
pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAAD--TRGLAAGPAALAA--PAAPASPPSPQR
.: : :.: .. .: ::..:. : : ::
NP_071 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIG
10 20 30 40
60 70 80 90 100 110
pF1KB8 SPPRSPE-PGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVL
. . : :. : .::: . : : :::::::::::::::::::::::::::::::: :
NP_071 DMKVKGEAPANSG-APAGAAGR-AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAEL
50 60 70 80 90
120 130 140 150 160 170
pF1KB8 SKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLP
::::::.:: :. :::::::::::::::::..:::::::::::.::... .:.: :.:
NP_071 SKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFL-H
100 110 120 130 140 150
180 190 200 210
pF1KB8 GLAPPQ-----P--------------PPEPFPAASG-----SARAFRELPPLGAE-FDGL
::: :: : : . :::. . .:. ::: .::
NP_071 GLAEPQAAALGPEGGRVAMDGLGLQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGY
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB8 GLPTPERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEAL
::::. :::::..: . ::: : : :: : . :. ...: : .: : .
NP_071 PLPTPDTSPLDGVDP-DPAFFAAPM-PGDC---PAAGTYSYAQVS-DYAGPPEPPAGPMH
220 230 240 250 260 270
280 290
pF1KB8 -RTAP-PAAP-LAGL---------YYGTLGTPG-----------------------PYPG
: .: ::.: . :: :::..:.:: : ::
NP_071 PRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPG
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB8 PLSPPPEAPPL-ESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGP
:::::: : ....: :: .: ..:: :::.:::. .:. ::::.
NP_071 QPSPPPEALPCRDGTDPSQPA-ELLGEVDRTEFEQYLHFV-CKPEM-GLPYQGHDSGVNL
340 350 360 370 380
360 370 380
pF1KB8 RAMSCPEESSLISALSDASSAVYYSACISG
NP_071 PDSHGAISSVVSDASSAVYYCNYPDV
390 400 410
>>NP_113627 (OMIM: 612202) transcription factor SOX-7 [H (388 aa)
initn: 745 init1: 480 opt: 559 Z-score: 317.5 bits: 67.5 E(85289): 6e-11
Smith-Waterman score: 758; 42.3% identity (58.2% similar) in 397 aa overlap (30-371:2-376)
10 20 30 40 50 60
pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR
:. : : .: :: : . : :::
NP_113 MASLLGAYPWPEGLECPALDAELSDGQ-SPPA
10 20 30
70 80 90 100 110 120
pF1KB8 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG
:.: :. .: .::::::::::::::::::::::: :::::::: ::::::
NP_113 VPRP------PGDKG-----SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLG
40 50 60 70 80
130 140 150 160 170
pF1KB8 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARK-ARRLEPGLLLPGLAP
:.:: :. ..:::.:.::::::.::..:.:::::::::::::.. .:..::.:: .:.
NP_113 KSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSR
90 100 110 120 130 140
180 190 200 210
pF1KB8 PQPP-PEPFPAASG------------------SARAFRELPPLGAEFDGL---------G
: :: .. : : :. . : :. : :
NP_113 DQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGGGTPSSVDTYPYG
150 160 170 180 190 200
220 230 240 250 260
pF1KB8 LPTP-ERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAP-----TELSRDPGGCYGAP
:::: : :::: ::: : .:: : : .: : :. : : . .: : . :
NP_113 LPTPPEMSPLDVLEP-EQTFFSSPCQEEHG--HPRRIPHLPGHPYSPEYAPSPLHC-SHP
210 220 230 240 250
270 280 290 300
pF1KB8 LAE-ALRTAP--------PAAPLAGLYYGTLGTPGP-------YPGPLSPPPEAPPLESA
:. :: .: :. : . ::. .: : . : :::::: : ...
NP_113 LGSLALGQSPGVSMMSPVPGCPPSPAYYSP-ATYHPLHSNLQAHLGQLSPPPEHPGFDAL
260 270 280 290 300 310
310 320 330 340 350 360
pF1KB8 EPLGPAADLWADVDLTEFDQYLNCSRTRPD-APG---LPYHVALAKLGPRAMSCPEESSL
. :. . .: .:.: .::::::: . .:: : : : :: .... : . : :.::
NP_113 DQLSQV-ELLGDMDRNEFDQYLN-TPGHPDSATGAMALSGHVPVSQVTP---TGPTETSL
320 330 340 350 360 370
370 380
pF1KB8 ISALSDASSAVYYSACISG
::.:.:
NP_113 ISVLADATATYYNSYSVS
380
>>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa)
initn: 401 init1: 365 opt: 441 Z-score: 254.5 bits: 56.1 E(85289): 1.9e-07
Smith-Waterman score: 456; 30.9% identity (55.7% similar) in 327 aa overlap (6-305:56-382)
10 20 30
pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADT--R
:. :: . : . ::. . .: .
NP_005 ISLPFPPDSLAHRPPSSAPTESQGLFTVAAPAPGAPSPPATLAHLLPAPAMYSLLETELK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 GLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAG--RGERQAADESRIRRPMNA
. .. :. :. ..::.: . .: . . : . .: : ..:..:..:::::
NP_005 NPVGTPTQAAGTGGPAAPGGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNA
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 FMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPN
::::.. .:...: .:: .::. .:: :: :: :. ::::::..::.:::. :....:.
NP_005 FMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPD
150 160 170 180 190 200
160 170 180 190 200
pF1KB8 YKYRPRRKKQA--RKARRLEP-GLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFD
:::::::: .. .: . : ::: :: : ::..: . . .. .
NP_005 YKYRPRRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVN
210 220 230 240 250 260
210 220 230 240 250
pF1KB8 GL--GLPTPERSPLDGLEP-GEAAFFPPPAAPE----DCA---LRPFRAPYAPTELSRDP
: : . . : .: . .. :::: : : : :. : : . ..
NP_005 GWANGAYSLVQEQLGYAQPPSMSSPPPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAA
270 280 290 300 310 320
260 270 280 290 300
pF1KB8 GGC----YG--APLAEALRTAP----PAAPLAGLYYGTLGTPGPYPGPLSPPPEAPPLES
.. :: :: : : .: ::. :. .. . ::. . .. : .::
NP_005 AAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAI
330 340 350 360 370 380
310 320 330 340 350 360
pF1KB8 AEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPEESSLISA
NP_005 ASHSQRACLGDLRDMISMYLPPGGDAADAASPLPGGRLHGVHQHYQGAGTAVNGTVPLTH
390 400 410 420 430 440
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 544 init1: 403 opt: 430 Z-score: 252.3 bits: 54.7 E(85289): 2.6e-07
Smith-Waterman score: 431; 37.7% identity (55.2% similar) in 239 aa overlap (37-255:2-231)
10 20 30 40 50 60
pF1KB8 GYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPG-
: :.. : ::. . : :
NP_008 MALPGSSQDQAWSLEPPAATAAASSSSGPQE
10 20 30
70 80 90 100 110 120
pF1KB8 RYGL-SPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWK
: : :::. : . ...:::::::::.. .:...::::: .::. .:: :: ::
NP_008 REGAGSPAAPG---TLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWK
40 50 60 70 80
130 140 150 160 170 180
pF1KB8 ELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPP
:. :::::::::.:::..::::.:.:::::::: .. : . : .:: :
NP_008 LLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLW
90 100 110 120 130 140
190 200 210 220
pF1KB8 EPFPAASGSARAFRELPP----------LGAEFDGLGLPTPERSP-----LDG-LEPGEA
: :.. .:.: :: :. : :.: : :.: : : .
NP_008 GPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYT
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB8 AFFPPPAAPEDCALRPFRAPYA--PTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGT
..:: ..: :. : : : :.
NP_008 HYLPP-GSPT-----PYNPPLAGAPMPLTHL
210 220 230
>>NP_055402 (OMIM: 605923) transcription factor SOX-8 [H (446 aa)
initn: 487 init1: 397 opt: 435 Z-score: 251.4 bits: 55.5 E(85289): 2.9e-07
Smith-Waterman score: 446; 31.7% identity (48.7% similar) in 398 aa overlap (12-381:31-407)
10 20 30 40
pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAG-PA
: ::. : . : : :. . : : : ::
NP_055 MLDMSEARSQPPCSPSGTASSMSHVEDSDSDAPPSP---AGSEGLGRAGVAVGGARGDPA
10 20 30 40 50
50 60 70 80 90
pF1KB8 ALAAPAAPASPPSPQRSPPRS------PEPGRYGLSPAGRGERQAADESRIRRPMNAFMV
: :: . . .. : : : : : : .: . ...::::::::
NP_055 EAADERFPACIRDAVSQVLKGYDWSLVPMPVRGG----GGGALKA--KPHVKRPMNAFMV
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 WAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKY
::. :..::.: : :::: ::: ::: :. :. .:::::::::::::::: .:::.:::
NP_055 WAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKY
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 RPRRKKQARKARR-LEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGLGLP
.:::.:.:. .. . : :.: . : .: . . .. : : :
NP_055 QPRRRKSAKAGHSDSDSG---AELGPHPGGGAVYKAEAGLGDGHHHGDHTGQTH---GPP
180 190 200 210 220
220 230 240 250 260
pF1KB8 TPERSPLDGLEPGEAA--FFPPPAAPEDCALRPFRAPYAP-TELSRDPGGCYGA----PL
:: .: :. . : . : : . . . . .::: . : . : .
NP_055 TPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELSSEVMGTMDAFDVHEF
230 240 250 260 270 280
270 280 290 300 310
pF1KB8 AEALRTAPPAAPLAGLYYG-TLGTPGPYP------GP---LSPPPEAPPLESAEPLGPAA
. : . :: : : :: . : : .: :: .:: . :.
NP_055 DQYLPLGGPAPPEPGQAYGGAYFHAGASPVWAHKSAPSASASPTETGPPRPHIKTEQPSP
290 300 310 320 330 340
320 330 340 350 360 370
pF1KB8 DLWADVDLTEFDQYLNCS---RTRPDAPGLPYHVALAKLGPRAMSCPEESSLISALSDAS
..: : : .:: . : ::. :. . . : . :: .: .
NP_055 GHYGDQPRGSPD-YGSCSGQSSATPAAPAGPFAGSQGDYGDL-----QASSYYGAYPGYA
350 360 370 380 390
380
pF1KB8 SAVYYSACISG
..: :
NP_055 PGLYQYPCFHSPRRPYASPLLNGLALPPAHSPTSHWDQPVYTTLTRP
400 410 420 430 440
>>NP_000337 (OMIM: 114290,608160,616425) transcription f (509 aa)
initn: 459 init1: 391 opt: 430 Z-score: 248.0 bits: 55.0 E(85289): 4.5e-07
Smith-Waterman score: 468; 32.3% identity (52.9% similar) in 359 aa overlap (7-316:17-372)
10 20 30 40
pF1KB8 MQRSPPGYGAQDDPPARRDCAWAP-GHGAAADTRG-------LAAGPAAL
: .. .: .: : .: :...::.. . : :
NP_000 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 AAPAAPASPPSPQRSPPRSPEPGR-YGLSPAG-RGERQAADESRIRRPMNAFMVWAKDER
. . : : . : . : : : . .. .. ...::::::::::. :
NP_000 KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 KRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKK
..::.: : :::: ::: ::: :. :: .:::::::::::::::: .:::.:::.:::.:
NP_000 RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
130 140 150 160 170 180
170 180 190 200 210
pF1KB8 QARKARRLEPGLLLPGLAPPQPPPEPFPAASG-SARAFRELPPLGAEFDGL--GLPTPER
...... :. . . : : :. .. :. : : .: : :::
NP_000 SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPG-EHSGQSQGPPTPPT
190 200 210 220 230
220 230 240 250
pF1KB8 SPLDGLEPGEAAF------FP-----PPAAPEDCALRPFRAPYAPTELSRD---------
.: ..::.: . .: :: .: . . . . . :
NP_000 TPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLP
240 250 260 270 280 290
260 270 280 290 300
pF1KB8 PGGCYGAPLAEALRT-----------APPAAPLAG-LYYGTLGTPGPYPG--PLSPP-PE
:.: :.: ... : : ::. :: .... .: : : : .:: :.
NP_000 PNGHPGVPATHGQVTYTGSYGISSTAATPAS--AGHVWMSKQQAPPPPPQQPPQAPPAPQ
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB8 APPL-ESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPE
::: ..: : :::
NP_000 APPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQ
360 370 380 390 400 410
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 465 init1: 383 opt: 422 Z-score: 246.4 bits: 54.1 E(85289): 5.5e-07
Smith-Waterman score: 422; 46.5% identity (74.4% similar) in 129 aa overlap (51-176:11-135)
30 40 50 60 70 80
pF1KB8 AWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAGRGERQAA
::.::.. . : . :: .....
NP_003 MYNMMETELKPPGPQQTSGGG--GGNSTAAAAGGNQKNSP
10 20 30
90 100 110 120 130 140
pF1KB8 DESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAER
: :..:::::::::.. .:...::.:: .::. .:: :: :: :. .:::::..::.:
NP_003 D--RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR
40 50 60 70 80 90
150 160 170 180 190
pF1KB8 LRVQHLRDHPNYKYRPRRKKQA--RKARRLEPG-LLLPGLAPPQPPPEPFPAASGSARAF
::. :...::.:::::::: .. .: . :: :: ::
NP_003 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQR
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 RELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRD
NP_003 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTY
160 170 180 190 200 210
>>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa)
initn: 455 init1: 367 opt: 414 Z-score: 243.7 bits: 53.2 E(85289): 7.7e-07
Smith-Waterman score: 433; 36.5% identity (59.2% similar) in 260 aa overlap (85-330:8-232)
60 70 80 90 100 110
pF1KB8 QRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAV
:.:::::::::.. .:...::.:: .::.
NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSE
10 20 30
120 130 140 150 160 170
pF1KB8 LSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQA--RKARRLEPGL
.:: :: :: :. :::::...::.:::.::...::.:::::::: . .: : . :
NP_004 ISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP--
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB8 LLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFP
:: :. .:. ::. :.:: ::: : .::.. ::.:
NP_004 -LPYLGD----TDPLKAAGL---------PVGAS-DGL-LSAPEKA---------RAFLP
100 110 120 130
240 250 260 270 280
pF1KB8 PPAAPEDCALRPFRAPYAPTELSRDPGGCYG-APLAEALRTAPPAAPLA--GLYYGTLGT
: .:: . : : : .. . ... .: .: . : . : :. :. . .:.:.
NP_004 PASAPYSL-LDP--AQFSSSAIQK-----MGEVPHTLATGALPYASTLGYQNGAFGSLSC
140 150 160 170 180
290 300 310 320 330 340
pF1KB8 PGPY----PGPLSPPPEAP---PLESAEPLGP--AADLWADVDLTEFDQYLNCSRTRPDA
:. . :.: .: .: :: : : : :. . : .: :
NP_004 PSQHTHTHPSPTNPGYVVPCNCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
190 200 210 220 230 240
350 360 370 380
pF1KB8 PGLPYHVALAKLGPRAMSCPEESSLISALSDASSAVYYSACISG
>>NP_008872 (OMIM: 602229,609136,611584,613266) transcri (466 aa)
initn: 446 init1: 386 opt: 414 Z-score: 240.1 bits: 53.5 E(85289): 1.2e-06
Smith-Waterman score: 414; 45.5% identity (63.6% similar) in 154 aa overlap (85-228:104-254)
60 70 80 90 100 110
pF1KB8 QRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAV
..::::::::::. :..::.: : ::::
NP_008 EAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAE
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB8 LSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLL
::: ::: :. :: ..::::.:::::::.:: .:::.:::.:::.:... :.
NP_008 LSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAE---C
140 150 160 170 180 190
180 190 200 210 220
pF1KB8 PGLAPPQPPPEPFPAASGSARAFRELPPLGAEF-DG---------LGLPTPERSPLDGLE
:: : . : ::. .. : :. . :: : ::: .: :.
NP_008 PGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQ
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB8 PGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYY
:.:
NP_008 SGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQYLPPNGHPGHV
260 270 280 290 300 310
384 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:25:11 2016 done: Tue Nov 8 04:25:13 2016
Total Scan time: 10.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]