Result of FASTA (omim) for
pFN21AB8971
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8971, 362 aa
1>>>pF1KB8971 362 - 362 aa - 362 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.0150+/-0.000304; mu= 25.3502+/- 0.019
mean_var=97.2683+/-22.775, 0's: 0 Z-trim(117.8): 565 B-trim: 1555 in 1/53
Lambda= 0.130043
statistics sampled from 29409 (30108) to 29409 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.353), width: 16
Scan time: 9.220
The best scores are: opt bits E(85289)
NP_057686 (OMIM: 600240) C-C chemokine receptor ty ( 362) 2364 453.7 3e-127
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 735 148.0 3.1e-35
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 735 148.1 3.1e-35
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 735 148.1 3.3e-35
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 735 148.1 3.3e-35
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 734 147.9 3.5e-35
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 734 147.9 3.5e-35
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 734 147.9 3.5e-35
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 734 147.9 3.6e-35
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 689 139.3 1.1e-32
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 681 137.9 3.4e-32
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 681 137.9 3.4e-32
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 661 134.1 4.6e-31
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 661 134.1 4.6e-31
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 661 134.2 4.7e-31
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 661 134.2 4.7e-31
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 650 132.1 2e-30
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 650 132.1 2e-30
NP_001707 (OMIM: 601613) C-X-C chemokine receptor ( 372) 621 126.7 8.5e-29
NP_116743 (OMIM: 601613) C-X-C chemokine receptor ( 327) 603 123.2 8.3e-28
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 586 120.1 7.8e-27
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 586 120.1 7.8e-27
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 581 119.1 1.5e-26
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 571 117.2 5.5e-26
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 571 117.3 5.5e-26
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 568 116.7 8.2e-26
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 568 116.7 8.2e-26
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 567 116.6 9.7e-26
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 562 115.6 1.8e-25
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 562 115.6 1.8e-25
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 562 115.6 1.8e-25
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 562 115.6 1.8e-25
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 562 115.6 1.8e-25
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 562 115.6 1.8e-25
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 552 113.7 6.5e-25
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 552 113.7 6.5e-25
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 552 113.7 6.5e-25
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 552 113.7 6.5e-25
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 552 113.7 6.7e-25
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 552 113.7 6.7e-25
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 552 113.8 7.1e-25
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 552 113.8 7.1e-25
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 550 113.3 8.6e-25
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 550 113.3 8.6e-25
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 548 113.0 1.1e-24
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 542 111.8 2.4e-24
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 499 103.7 6.4e-22
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 499 103.7 6.4e-22
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 499 103.7 6.4e-22
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 499 103.8 6.7e-22
>>NP_057686 (OMIM: 600240) C-C chemokine receptor type 1 (362 aa)
initn: 2364 init1: 2364 opt: 2364 Z-score: 2405.4 bits: 453.7 E(85289): 3e-127
Smith-Waterman score: 2364; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)
10 20 30 40 50 60
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSVIVWLLSLLLALPALLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSVIVWLLSLLLALPALLFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGQREGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVMVACYALLGRTLLAARGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QDGQREGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVMVACYALLGRTLLAARGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVTSGLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVTSGLAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 ARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRRGCPRRPRLSSCSAPTETHSLSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRRGCPRRPRLSSCSAPTETHSLSW
310 320 330 340 350 360
pF1KB8 DN
::
NP_057 DN
>>NP_001495 (OMIM: 300574) C-X-C chemokine receptor type (368 aa)
initn: 638 init1: 345 opt: 735 Z-score: 753.6 bits: 148.0 E(85289): 3.1e-35
Smith-Waterman score: 735; 41.1% identity (65.4% similar) in 350 aa overlap (14-360:29-365)
10 20 30 40
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQP
:. .: :. . : : : . :.::: :
NP_001 MVLEVSDHQVLNDAEVAALLENFSSSYDYGENESDSCCTSP-P--CPQDFSLNFDRAFLP
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 SVSLTVAALGLAGNGLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQG
.. . ::: ::: : :. : .::.: : :.. ::.::.:: ::.::::. :. :
NP_001 ALYSLLFLLGLLGNGAVAAV-LLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAAVQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 WSLGSATCRTISGLYSASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSVIV
: .::. :.. ..:.. .:.:: :.::::: :::. :..: : . :.:. :. . :
NP_001 WVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLY-RRGPPARVTLTCLAV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 WLLSLLLALPALLF--SQDGQREGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVM
: : ::.::: ..: .. .: . .:. :: :. . : : :.. :: ::: ::
NP_001 WGLCLLFALPDFIFLSAHHDERLNATHCQYNFP----QVGRTALRVLQLVAGFLLPLLVM
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 VACYALLGRTLLAARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCP
. ::: . .::..:: .: ::.:.::..:.::.. :: :..:.: :.: :.:
NP_001 AYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARNCG
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 ASKRKDVALLVTSGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRRGCPRR
.: ::: :::::. .: :::.::::.:..::. . :: .::. .:: :.
NP_001 RESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGCPN----QRGLQRQ
300 310 320 330 340
350 360
pF1KB8 PRLSSC-SAPTETHSLSWDN
: : :. .:: :.
NP_001 PSSSRRDSSWSETSEASYSGL
350 360
>>XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemokine (378 aa)
initn: 616 init1: 345 opt: 735 Z-score: 753.5 bits: 148.1 E(85289): 3.1e-35
Smith-Waterman score: 735; 41.1% identity (65.4% similar) in 350 aa overlap (14-360:39-375)
10 20 30 40
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAF
:. .: :. . : : : . :.:::
XP_005 GSPQGWVSDHQVLNDAEVAALLENFSSSYDYGENESDSCCTSP-P--CPQDFSLNFDRAF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 QPSVSLTVAALGLAGNGLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGAL
:.. . ::: ::: : :. : .::.: : :.. ::.::.:: ::.::::. :. :
XP_005 LPALYSLLFLLGLLGNGAVAAV-LLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 QGWSLGSATCRTISGLYSASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSV
: .::. :.. ..:.. .:.:: :.::::: :::. :..: : . :.:. :. .
XP_005 VQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLY-RRGPPARVTLTCL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 IVWLLSLLLALPALLF--SQDGQREGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLG
:: : ::.::: ..: .. .: . .:. :: :. . : : :.. :: :::
XP_005 AVWGLCLLFALPDFIFLSAHHDERLNATHCQYNFP----QVGRTALRVLQLVAGFLLPLL
190 200 210 220 230
230 240 250 260 270 280
pF1KB8 VMVACYALLGRTLLAARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERS
::. ::: . .::..:: .: ::.:.::..:.::.. :: :..:.: :.: :.
XP_005 VMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 CPASKRKDVALLVTSGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRRGCP
: .: ::: :::::. .: :::.::::.:..::. . :: .::. .::
XP_005 CGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGCPN----QRGLQ
300 310 320 330 340 350
350 360
pF1KB8 RRPRLSSC-SAPTETHSLSWDN
:.: : :. .:: :.
XP_005 RQPSSSRRDSSWSETSEASYSGL
360 370
>>XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemokine (415 aa)
initn: 616 init1: 345 opt: 735 Z-score: 753.1 bits: 148.1 E(85289): 3.3e-35
Smith-Waterman score: 735; 41.1% identity (65.4% similar) in 350 aa overlap (14-360:76-412)
10 20 30 40
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAF
:. .: :. . : : : . :.:::
XP_016 PFPPSQVSDHQVLNDAEVAALLENFSSSYDYGENESDSCCTSP-P--CPQDFSLNFDRAF
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB8 QPSVSLTVAALGLAGNGLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGAL
:.. . ::: ::: : :. : .::.: : :.. ::.::.:: ::.::::. :. :
XP_016 LPALYSLLFLLGLLGNGAVAAV-LLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAA
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB8 QGWSLGSATCRTISGLYSASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSV
: .::. :.. ..:.. .:.:: :.::::: :::. :..: : . :.:. :. .
XP_016 VQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLY-RRGPPARVTLTCL
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB8 IVWLLSLLLALPALLF--SQDGQREGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLG
:: : ::.::: ..: .. .: . .:. :: :. . : : :.. :: :::
XP_016 AVWGLCLLFALPDFIFLSAHHDERLNATHCQYNFP----QVGRTALRVLQLVAGFLLPLL
230 240 250 260 270
230 240 250 260 270 280
pF1KB8 VMVACYALLGRTLLAARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERS
::. ::: . .::..:: .: ::.:.::..:.::.. :: :..:.: :.: :.
XP_016 VMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARN
280 290 300 310 320 330
290 300 310 320 330 340
pF1KB8 CPASKRKDVALLVTSGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRRGCP
: .: ::: :::::. .: :::.::::.:..::. . :: .::. .::
XP_016 CGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGCPN----QRGLQ
340 350 360 370 380 390
350 360
pF1KB8 RRPRLSSC-SAPTETHSLSWDN
:.: : :. .:: :.
XP_016 RQPSSSRRDSSWSETSEASYSGL
400 410
>>NP_001136269 (OMIM: 300574) C-X-C chemokine receptor t (415 aa)
initn: 616 init1: 345 opt: 735 Z-score: 753.1 bits: 148.1 E(85289): 3.3e-35
Smith-Waterman score: 735; 41.1% identity (65.4% similar) in 350 aa overlap (14-360:76-412)
10 20 30 40
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAF
:. .: :. . : : : . :.:::
NP_001 PFPPSQVSDHQVLNDAEVAALLENFSSSYDYGENESDSCCTSP-P--CPQDFSLNFDRAF
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB8 QPSVSLTVAALGLAGNGLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGAL
:.. . ::: ::: : :. : .::.: : :.. ::.::.:: ::.::::. :. :
NP_001 LPALYSLLFLLGLLGNGAVAAV-LLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAA
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB8 QGWSLGSATCRTISGLYSASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSV
: .::. :.. ..:.. .:.:: :.::::: :::. :..: : . :.:. :. .
NP_001 VQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLY-RRGPPARVTLTCL
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB8 IVWLLSLLLALPALLF--SQDGQREGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLG
:: : ::.::: ..: .. .: . .:. :: :. . : : :.. :: :::
NP_001 AVWGLCLLFALPDFIFLSAHHDERLNATHCQYNFP----QVGRTALRVLQLVAGFLLPLL
230 240 250 260 270
230 240 250 260 270 280
pF1KB8 VMVACYALLGRTLLAARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERS
::. ::: . .::..:: .: ::.:.::..:.::.. :: :..:.: :.: :.
NP_001 VMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARN
280 290 300 310 320 330
290 300 310 320 330 340
pF1KB8 CPASKRKDVALLVTSGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRRGCP
: .: ::: :::::. .: :::.::::.:..::. . :: .::. .::
NP_001 CGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGCPN----QRGLQ
340 350 360 370 380 390
350 360
pF1KB8 RRPRLSSC-SAPTETHSLSWDN
:.: : :. .:: :.
NP_001 RQPSSSRRDSSWSETSEASYSGL
400 410
>>NP_001288646 (OMIM: 600242) C-C chemokine receptor typ (372 aa)
initn: 589 init1: 505 opt: 734 Z-score: 752.6 bits: 147.9 E(85289): 3.5e-35
Smith-Waterman score: 734; 41.0% identity (67.8% similar) in 332 aa overlap (30-355:41-366)
10 20 30 40 50
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGN
:: : ::. :. : : . . .:: ::
NP_001 VIFQVCLCQDEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFVGLLGN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB8 GLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGL
:::. :.. .: .. :...::.::.::.:. ::::: : .: ..: .: :. : ..
NP_001 GLVVLTYIYFKRL-KTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAI
80 90 100 110 120
120 130 140 150 160 170
pF1KB8 YSASFHAGFLFLACISADRYVAIARALPAG-PRPSTPGRAHLVSVIVWLLSLLLALPALL
:. :: .:.:.: ::: ::::::..:. : : . ..: : .:.:. .:..: ::
NP_001 YKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWILATVLSIPELL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 FSQDGQR---EGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVMVACYALLGRTLL
.: : :: : :: :: : . . . :::...:: .:: .: :: .. ::::
NP_001 YS-DLQRSSSEQAMRCSLI-TEHVEAFI--TIQVAQMVIGFLVPLLAMSFCYLVIIRTLL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 AARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVT
::. :: .:..:..:.:..:.:.::::. ..: .:. . .: ::. ..: ::
NP_001 QARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 SGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRR--GCPRRPRLSSCSAPT
.:: .:: .:: ::::.:..::.:: .:.. .: : : :. .: :. : :: :. .
NP_001 YSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSC-RHIRRSSMSVEA
310 320 330 340 350 360
360
pF1KB8 ETHSLSWDN
::
NP_001 ETTTTFSP
370
>>NP_001288645 (OMIM: 600242) C-C chemokine receptor typ (372 aa)
initn: 589 init1: 505 opt: 734 Z-score: 752.6 bits: 147.9 E(85289): 3.5e-35
Smith-Waterman score: 734; 41.0% identity (67.8% similar) in 332 aa overlap (30-355:41-366)
10 20 30 40 50
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGN
:: : ::. :. : : . . .:: ::
NP_001 VIFQVCLCQDEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFVGLLGN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB8 GLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGL
:::. :.. .: .. :...::.::.::.:. ::::: : .: ..: .: :. : ..
NP_001 GLVVLTYIYFKRL-KTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAI
80 90 100 110 120
120 130 140 150 160 170
pF1KB8 YSASFHAGFLFLACISADRYVAIARALPAG-PRPSTPGRAHLVSVIVWLLSLLLALPALL
:. :: .:.:.: ::: ::::::..:. : : . ..: : .:.:. .:..: ::
NP_001 YKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWILATVLSIPELL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 FSQDGQR---EGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVMVACYALLGRTLL
.: : :: : :: :: : . . . :::...:: .:: .: :: .. ::::
NP_001 YS-DLQRSSSEQAMRCSLI-TEHVEAFI--TIQVAQMVIGFLVPLLAMSFCYLVIIRTLL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 AARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVT
::. :: .:..:..:.:..:.:.::::. ..: .:. . .: ::. ..: ::
NP_001 QARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 SGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRR--GCPRRPRLSSCSAPT
.:: .:: .:: ::::.:..::.:: .:.. .: : : :. .: :. : :: :. .
NP_001 YSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSC-RHIRRSSMSVEA
310 320 330 340 350 360
360
pF1KB8 ETHSLSWDN
::
NP_001 ETTTTFSP
370
>>NP_001288647 (OMIM: 600242) C-C chemokine receptor typ (372 aa)
initn: 589 init1: 505 opt: 734 Z-score: 752.6 bits: 147.9 E(85289): 3.5e-35
Smith-Waterman score: 734; 41.0% identity (67.8% similar) in 332 aa overlap (30-355:41-366)
10 20 30 40 50
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGN
:: : ::. :. : : . . .:: ::
NP_001 VIFQVCLCQDEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFVGLLGN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB8 GLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGL
:::. :.. .: .. :...::.::.::.:. ::::: : .: ..: .: :. : ..
NP_001 GLVVLTYIYFKRL-KTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAI
80 90 100 110 120
120 130 140 150 160 170
pF1KB8 YSASFHAGFLFLACISADRYVAIARALPAG-PRPSTPGRAHLVSVIVWLLSLLLALPALL
:. :: .:.:.: ::: ::::::..:. : : . ..: : .:.:. .:..: ::
NP_001 YKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWILATVLSIPELL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 FSQDGQR---EGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVMVACYALLGRTLL
.: : :: : :: :: : . . . :::...:: .:: .: :: .. ::::
NP_001 YS-DLQRSSSEQAMRCSLI-TEHVEAFI--TIQVAQMVIGFLVPLLAMSFCYLVIIRTLL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 AARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVT
::. :: .:..:..:.:..:.:.::::. ..: .:. . .: ::. ..: ::
NP_001 QARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 SGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRR--GCPRRPRLSSCSAPT
.:: .:: .:: ::::.:..::.:: .:.. .: : : :. .: :. : :: :. .
NP_001 YSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSC-RHIRRSSMSVEA
310 320 330 340 350 360
360
pF1KB8 ETHSLSWDN
::
NP_001 ETTTTFSP
370
>>NP_001829 (OMIM: 600242) C-C chemokine receptor type 7 (378 aa)
initn: 589 init1: 505 opt: 734 Z-score: 752.5 bits: 147.9 E(85289): 3.6e-35
Smith-Waterman score: 734; 41.0% identity (67.8% similar) in 332 aa overlap (30-355:47-372)
10 20 30 40 50
pF1KB8 MGTEATEQVSWGHYSGDEEDAYSAEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGN
:: : ::. :. : : . . .:: ::
NP_001 VIFQVCLCQDEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFVGLLGN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB8 GLVLATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGL
:::. :.. .: .. :...::.::.::.:. ::::: : .: ..: .: :. : ..
NP_001 GLVVLTYIYFKRL-KTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB8 YSASFHAGFLFLACISADRYVAIARALPAG-PRPSTPGRAHLVSVIVWLLSLLLALPALL
:. :: .:.:.: ::: ::::::..:. : : . ..: : .:.:. .:..: ::
NP_001 YKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWILATVLSIPELL
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB8 FSQDGQR---EGQRRCRLIFPEGLTQTVKGASAVAQVALGFALPLGVMVACYALLGRTLL
.: : :: : :: :: : . . . :::...:: .:: .: :: .. ::::
NP_001 YS-DLQRSSSEQAMRCSLI-TEHVEAFI--TIQVAQMVIGFLVPLLAMSFCYLVIIRTLL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB8 AARGPERRRALRVVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVT
::. :: .:..:..:.:..:.:.::::. ..: .:. . .: ::. ..: ::
NP_001 QARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB8 SGLALARCGLNPVLYAFLGLRFRQDLRRLLRGGSCPSGPQPRR--GCPRRPRLSSCSAPT
.:: .:: .:: ::::.:..::.:: .:.. .: : : :. .: :. : :: :. .
NP_001 YSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSC-RHIRRSSMSVEA
320 330 340 350 360 370
360
pF1KB8 ETHSLSWDN
::
NP_001 ETTTTFSP
>>NP_001288643 (OMIM: 600242) C-C chemokine receptor typ (315 aa)
initn: 563 init1: 505 opt: 689 Z-score: 707.6 bits: 139.3 E(85289): 1.1e-32
Smith-Waterman score: 689; 41.6% identity (69.2% similar) in 308 aa overlap (54-355:8-309)
30 40 50 60 70 80
pF1KB8 AEPLPELCYKADVQAFSRAFQPSVSLTVAALGLAGNGLVLATHLAARRAARSPTSAHLLQ
.:: :::::. :.. .: .. :...::.
NP_001 MYSIICFVGLLGNGLVVLTYIYFKRL-KTMTDTYLLN
10 20 30
90 100 110 120 130 140
pF1KB8 LALADLLLALTLPFAAAGALQGWSLGSATCRTISGLYSASFHAGFLFLACISADRYVAIA
::.::.:. ::::: : .: ..: .: :. : ..:. :: .:.:.: ::: ::::::.
NP_001 LAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIV
40 50 60 70 80 90
150 160 170 180 190
pF1KB8 RALPAG-PRPSTPGRAHLVSVIVWLLSLLLALPALLFSQDGQR---EGQRRCRLIFPEGL
.:. : : . ..: : .:.:. .:..: ::.: : :: : :: :: : .
NP_001 QAVSAHRHRARVLLISKLSCVGIWILATVLSIPELLYS-DLQRSSSEQAMRCSLI-TEHV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 TQTVKGASAVAQVALGFALPLGVMVACYALLGRTLLAARGPERRRALRVVVALVAAFVVL
. . :::...:: .:: .: :: .. :::: ::. :: .:..:..:.:..:.:.
NP_001 EAFI--TIQVAQMVIGFLVPLLAMSFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFIVF
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 QLPYSLALLLDTADLLAARERSCPASKRKDVALLVTSGLALARCGLNPVLYAFLGLRFRQ
::::. ..: .:. . .: ::. ..: :: .:: .:: .:: ::::.:..::.
NP_001 QLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVTYSLACVRCCVNPFLYAFIGVKFRN
220 230 240 250 260 270
320 330 340 350 360
pF1KB8 DLRRLLRGGSCPSGPQPRR--GCPRRPRLSSCSAPTETHSLSWDN
:: .:.. .: : : :. .: :. : :: :. .::
NP_001 DLFKLFKDLGCLSQEQLRQWSSC-RHIRRSSMSVEAETTTTFSP
280 290 300 310
362 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:54:50 2016 done: Mon Nov 7 03:54:51 2016
Total Scan time: 9.220 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]