Result of FASTA (omim) for
pFN21AB8966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8966, 356 aa
1>>>pF1KB8966 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.8402+/-0.000374; mu= -10.1313+/- 0.024
mean_var=473.4868+/-95.807, 0's: 0 Z-trim(126.2): 137 B-trim: 60 in 1/61
Lambda= 0.058941
statistics sampled from 51423 (51586) to 51423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.605), width: 16
Scan time: 11.120
The best scores are: opt bits E(85289)
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 2484 224.7 2.5e-58
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 1582 147.8 2.4e-35
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 866 87.1 6.8e-17
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 444 51.3 4.8e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 444 51.3 4.8e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 399 47.2 4.7e-05
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 393 46.8 7.1e-05
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 388 46.3 9.1e-05
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 388 46.3 9.1e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 386 46.4 0.00014
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 377 45.4 0.00019
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 359 43.8 0.00049
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 360 44.2 0.00067
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 356 43.7 0.00069
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 357 43.8 0.0007
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 357 43.8 0.0007
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 357 43.9 0.0008
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 353 43.6 0.0011
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 342 42.5 0.0015
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 325 41.0 0.0038
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 317 40.4 0.0071
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 313 40.0 0.0077
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 307 39.4 0.0096
>>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo (356 aa)
initn: 2484 init1: 2484 opt: 2484 Z-score: 1168.2 bits: 224.7 E(85289): 2.5e-58
Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
310 320 330 340 350
>>XP_005257332 (OMIM: 142967) PREDICTED: homeobox protei (247 aa)
initn: 1582 init1: 1582 opt: 1582 Z-score: 755.6 bits: 147.8 E(85289): 2.4e-35
Smith-Waterman score: 1582; 99.1% identity (100.0% similar) in 227 aa overlap (130-356:21-247)
100 110 120 130 140 150
pF1KB8 EKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELE
..::::::::::::::::::::::::::::
XP_005 MLCPDPGRGCRLERERRKPKSNGLGLPEAGGGGARRLRTAYTNTQLLELE
10 20 30 40 50
160 170 180 190 200 210
pF1KB8 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE
60 70 80 90 100 110
220 230 240 250 260 270
pF1KB8 DICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCAL
120 130 140 150 160 170
280 290 300 310 320 330
pF1KB8 RGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEE
180 190 200 210 220 230
340 350
pF1KB8 ELDFFTSTLCAIDLQFP
:::::::::::::::::
XP_005 ELDFFTSTLCAIDLQFP
240
>>NP_006726 (OMIM: 604685,612290) homeobox protein Hox-A (376 aa)
initn: 921 init1: 716 opt: 866 Z-score: 424.3 bits: 87.1 E(85289): 6.8e-17
Smith-Waterman score: 1037; 51.2% identity (67.5% similar) in 381 aa overlap (1-354:1-372)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ
::.::::::::::::::::::::::: : .:::.:::: ::: :::::::.:::.
NP_006 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA
::. : . : . .:: : : : : ::.:::::::.::: .: :. :
NP_006 PGSH--PRHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKK---TALLPAAA
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ASAVPA-SGVG--SPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRV
:.:. : .: . : ..: . ...:::.:::::::::::::::::::::::::::::::
NP_006 AAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRV
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 EIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP---
::::::::::::::::::::::::::::: .: ..: : .::: . . ::
NP_006 EIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLF
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 --AASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGAS
: : .: : .. . . .:.. ..: . . : ... . .
NP_006 EQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPT
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 SPGCALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSP
:.: : : . : .: . . : : :.. :..::::::: ..:::: ::::::
NP_006 VPNC-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSP
300 310 320 330 340 350
340 350
pF1KB8 VPFSEEELDFFTSTLCAIDLQFP
: .: . :::::.:: .::::
NP_006 VDISADSLDFFTDTLTTIDLQHLNY
360 370
>>NP_109377 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
NP_109 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
NP_109 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
NP_109 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
NP_109 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
NP_109 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
NP_109 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
NP_109 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
>>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
XP_006 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
XP_006 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
XP_006 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
XP_006 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
XP_006 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
XP_006 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
XP_006 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
>>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
XP_011 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
XP_011 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
XP_011 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
XP_011 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
XP_011 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
XP_011 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
XP_011 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
>>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
XP_005 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
XP_005 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
XP_005 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
XP_005 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
XP_005 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
XP_005 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
XP_005 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
>>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
NP_705 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
NP_705 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
NP_705 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
NP_705 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
NP_705 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
NP_705 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
NP_705 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
>>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
XP_005 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
XP_005 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
XP_005 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
XP_005 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
XP_005 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
XP_005 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
XP_005 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
>>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06
Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389)
10 20 30 40 50
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE
:: .. : : :. : : :::: .
XP_005 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q
50 60 70 80 90
60 70 80 90
pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE-----
. :. :: .: : : :: :::: :: : :: : .:
XP_005 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA
::::::... : . :..: :. .: :: : : ....: :::
XP_005 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA
160 170 180 190
150 160 170 180 190 200
pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR----
::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . .
XP_005 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA
. :. :. ::: .... . . :: : :. . :: :..
XP_005 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA
: : : : : .::: :::: . : . . .: .: . :.
XP_005 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV
320 330 340 350 360
320 330 340 350
pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
. : .. .. .:.: : :
XP_005 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH
370 380 390 400 410 420
356 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:47:59 2016 done: Sun Nov 6 13:48:00 2016
Total Scan time: 11.120 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]