FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8966, 356 aa
  1>>>pF1KB8966 356 - 356 aa - 356 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1590+/-0.000916; mu= -12.0519+/- 0.056
 mean_var=445.2359+/-90.694, 0's: 0 Z-trim(118.4): 111  B-trim: 0 in 0/55
 Lambda= 0.060783
 statistics sampled from 19239 (19355) to 19239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.595), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS11527.1 HOXB2 gene_id:3212|Hs108|chr17         ( 356) 2484 231.2 1.1e-60
CCDS5403.1 HOXA2 gene_id:3199|Hs108|chr7           ( 376)  866 89.3 5.8e-18


>>CCDS11527.1 HOXB2 gene_id:3212|Hs108|chr17              (356 aa)
 initn: 2484 init1: 2484 opt: 2484  Z-score: 1203.1  bits: 231.2 E(32554): 1.1e-60
Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB8 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
              310       320       330       340       350      

>>CCDS5403.1 HOXA2 gene_id:3199|Hs108|chr7                (376 aa)
 initn: 921 init1: 716 opt: 866  Z-score: 436.0  bits: 89.3 E(32554): 5.8e-18
Smith-Waterman score: 1037; 51.2% identity (67.5% similar) in 381 aa overlap (1-354:1-372)

               10        20        30        40           50       
pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ
       ::.::::::::::::::::::::::: : .:::.:::: :::      :::::::.:::.
CCDS54 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB8 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA
       ::.    :  .  : . .::     : :  :  : ::.:::::::.:::   .:  :. :
CCDS54 PGSH--PRHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKK---TALLPAAA
                 70        80        90        100          110    

       120          130       140       150       160       170    
pF1KB8 ASAVPA-SGVG--SPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRV
       :.:. : .: .  :  ..: . ...:::.:::::::::::::::::::::::::::::::
CCDS54 AAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRV
          120       130       140       150       160       170    

          180       190       200       210       220              
pF1KB8 EIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP---
       ::::::::::::::::::::::::::::: .:  ..:  :  .:::   . .  ::    
CCDS54 EIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLF
          180       190       200       210        220       230   

        230       240         250       260                  270   
pF1KB8 --AASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGAS
         : : .:    : ..  .      . .:.. ..: . . :           ...  . .
CCDS54 EQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPT
           240       250       260       270       280       290   

           280       290       300       310       320       330   
pF1KB8 SPGCALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSP
        :.: :   :    . : .:   .  . : : :.. :..::::::: ..:::: ::::::
CCDS54 VPNC-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSP
            300       310        320       330       340       350 

           340       350        
pF1KB8 VPFSEEELDFFTSTLCAIDLQFP  
       : .: . :::::.:: .::::    
CCDS54 VDISADSLDFFTDTLTTIDLQHLNY
             360       370      




356 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:47:58 2016 done: Sun Nov  6 13:47:58 2016
 Total Scan time:  3.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]