Result of FASTA (omim) for
pFN21AB8948
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8948, 316 aa
1>>>pF1KB8948 316 - 316 aa - 316 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.1023+/-0.000488; mu= -28.0460+/- 0.030
mean_var=716.1494+/-150.150, 0's: 0 Z-trim(123.8): 38 B-trim: 807 in 1/61
Lambda= 0.047926
statistics sampled from 44083 (44134) to 44083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.517), width: 16
Scan time: 8.470
The best scores are: opt bits E(85289)
NP_000067 (OMIM: 130650,600856,614732) cyclin-depe ( 316) 2131 161.7 1.8e-39
XP_016872577 (OMIM: 130650,600856,614732) PREDICTE ( 316) 2131 161.7 1.8e-39
NP_001116102 (OMIM: 130650,600856,614732) cyclin-d ( 305) 2069 157.4 3.5e-38
NP_001116103 (OMIM: 130650,600856,614732) cyclin-d ( 305) 2069 157.4 3.5e-38
XP_005252789 (OMIM: 130650,600856,614732) PREDICTE ( 175) 593 55.1 1.2e-07
>>NP_000067 (OMIM: 130650,600856,614732) cyclin-dependen (316 aa)
initn: 2131 init1: 2131 opt: 2131 Z-score: 829.4 bits: 161.7 E(85289): 1.8e-39
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
250 260 270 280 290 300
310
pF1KB8 APGVGSVEQTPRKRLR
::::::::::::::::
NP_000 APGVGSVEQTPRKRLR
310
>>XP_016872577 (OMIM: 130650,600856,614732) PREDICTED: c (316 aa)
initn: 2131 init1: 2131 opt: 2131 Z-score: 829.4 bits: 161.7 E(85289): 1.8e-39
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
250 260 270 280 290 300
310
pF1KB8 APGVGSVEQTPRKRLR
::::::::::::::::
XP_016 APGVGSVEQTPRKRLR
310
>>NP_001116102 (OMIM: 130650,600856,614732) cyclin-depen (305 aa)
initn: 2069 init1: 2069 opt: 2069 Z-score: 806.5 bits: 157.4 E(85289): 3.5e-38
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 305 aa overlap (12-316:1-305)
10 20 30 40 50 60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
10 20 30 40
70 80 90 100 110 120
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
230 240 250 260 270 280
310
pF1KB8 APGVGSVEQTPRKRLR
::::::::::::::::
NP_001 APGVGSVEQTPRKRLR
290 300
>>NP_001116103 (OMIM: 130650,600856,614732) cyclin-depen (305 aa)
initn: 2069 init1: 2069 opt: 2069 Z-score: 806.5 bits: 157.4 E(85289): 3.5e-38
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 305 aa overlap (12-316:1-305)
10 20 30 40 50 60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
10 20 30 40
70 80 90 100 110 120
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
230 240 250 260 270 280
310
pF1KB8 APGVGSVEQTPRKRLR
::::::::::::::::
NP_001 APGVGSVEQTPRKRLR
290 300
>>XP_005252789 (OMIM: 130650,600856,614732) PREDICTED: c (175 aa)
initn: 610 init1: 586 opt: 593 Z-score: 258.1 bits: 55.1 E(85289): 1.2e-07
Smith-Waterman score: 602; 71.0% identity (76.8% similar) in 138 aa overlap (12-140:1-135)
10 20 30 40 50 60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
10 20 30 40
70 80 90 100 110
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVG---------RCRLLLAPRPVAV
::::::::::::::::::::::::::::::::::::.. : : ..:: : .
XP_005 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQISSPSARDQRLRSRRAMSPRRVPL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 AVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAA
.::: : : . : :. :
XP_005 Q---APPLAWARWSRPRARGCGEPKPKEPRGNLPGQRTLEGRWASAGTVHVAATGGGCRR
110 120 130 140 150 160
316 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:36:55 2016 done: Mon Nov 7 19:36:57 2016
Total Scan time: 8.470 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]