Result of FASTA (omim) for
pFN21AB8944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8944, 304 aa
1>>>pF1KB8944 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7795+/-0.000319; mu= 12.2131+/- 0.020
mean_var=191.3683+/-38.715, 0's: 0 Z-trim(122.3): 208 B-trim: 31 in 1/56
Lambda= 0.092713
statistics sampled from 40022 (40263) to 40022 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.472), width: 16
Scan time: 8.730
The best scores are: opt bits E(85289)
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 2095 291.8 1.1e-78
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 643 97.7 3.5e-20
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 518 80.9 3.6e-15
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 378 62.2 1.7e-09
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 362 60.2 8.2e-09
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 335 56.3 7.5e-08
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 333 56.1 9.3e-08
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 334 56.3 9.7e-08
NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 330 55.7 1.3e-07
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 330 55.8 1.4e-07
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 309 52.8 8.2e-07
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 295 51.2 4.2e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 283 49.5 1.1e-05
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 282 49.4 1.3e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 278 48.6 1.3e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 278 48.6 1.3e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 278 48.6 1.3e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 278 48.7 1.6e-05
NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 276 48.4 1.8e-05
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 276 48.5 1.9e-05
NP_059106 (OMIM: 142976,614931) homeobox protein H ( 330) 277 48.7 1.9e-05
NP_000514 (OMIM: 113200,113300,142989,186000,18630 ( 343) 274 48.3 2.6e-05
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 270 47.6 3e-05
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 266 47.0 4.2e-05
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 268 47.5 4.3e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 264 46.8 5.4e-05
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 262 46.6 7e-05
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 262 46.6 7.2e-05
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 260 46.3 8.4e-05
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 259 46.2 9.4e-05
NP_006352 (OMIM: 604607) homeobox protein Hox-B13 ( 284) 256 45.8 0.00012
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 249 44.3 0.00012
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 257 46.2 0.00014
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 257 46.2 0.00014
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 254 45.6 0.00015
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 253 45.5 0.00019
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 247 44.6 0.00027
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 246 44.4 0.00029
>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa)
initn: 2095 init1: 2095 opt: 2095 Z-score: 1533.4 bits: 291.8 E(85289): 1.1e-78
Smith-Waterman score: 2095; 99.7% identity (99.7% similar) in 304 aa overlap (1-304:1-304)
10 20 30 40 50 60
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVFSFLPQAPSRQIS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
NP_055 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG
250 260 270 280 290 300
pF1KB8 NPLL
::::
NP_055 NPLL
>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa)
initn: 833 init1: 466 opt: 643 Z-score: 483.3 bits: 97.7 E(85289): 3.5e-20
Smith-Waterman score: 792; 44.5% identity (66.1% similar) in 339 aa overlap (21-304:3-338)
10 20 30 40 50
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYM-P-EFSTVFSFLPQAPSRQ
:: : :. :...:::.:.::. : .:.. ::: : : :
NP_067 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQ
10 20 30 40
60 70 80
pF1KB8 ISYPYSA----QVPPVREVS---YGLEPSGKWHHRNS-----------------------
...:::. .: :::::. :::: .:: .:..
NP_067 MTFPYSSNLAPHVQPVREVAFRDYGLE-RAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAG
50 60 70 80 90 100
90 100 110 120 130
pF1KB8 -YSSCYAAA-----------DELMHRECLPPS-TVTEILMKN-EGSYGGHHHPSAPHATP
:. :::: . :.:: :::. ..:.: : .. : .: ..
NP_067 GYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAA
110 120 130 140 150 160
140 150 160 170 180
pF1KB8 AGFYSSVNKNSVLPQAFDRFFDNA----YCGGGDPPAEPPCSGKGEA-KGEPEAPPASGL
..:::.:..:..:::.::.:.. : . : :: : . .: : ::.:.. ..:
NP_067 SNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGG
170 180 190 200 210 220
190 200 210 220 230 240
pF1KB8 AS---RAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGA-APNAPRTRKKRCPYSKFQIR
.: .: :.: .. :... .. : .. : ...: ::. :.:::::::.:.:::
NP_067 GSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQ--RSRKKRCPYTKYQIR
230 240 250 260 270
250 260 270 280 290 300
pF1KB8 ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.::::.
NP_067 ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
280 290 300 310 320 330
>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa)
initn: 766 init1: 480 opt: 518 Z-score: 393.3 bits: 80.9 E(85289): 3.6e-15
Smith-Waterman score: 956; 52.2% identity (73.0% similar) in 318 aa overlap (21-304:2-313)
10 20 30 40 50
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYM--PEFSTVFSFLPQAPS-R
:: ::: :.::.::::::::. :.::.. :::::.:: :
NP_005 MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSR
10 20 30 40
60 70 80 90 100 110
pF1KB8 QISYPYSAQVP---PVREVS---YGLEPSGKWHHRNSYSSCYAAADELMHRECLP-PSTV
..: ::...: :::::. :..::. ::: :.. . ::.: .::.::.:: ::..
NP_005 PMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSA-EELVHRDCLQAPSAA
50 60 70 80 90 100
120 130 140 150 160
pF1KB8 T---EILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPA
..: :. .. .:::. : :. ..:::.:..:.:::::::.::..:: : . :
NP_005 GVPGDVLAKSSANV--YHHPT-P-AVSSNFYSTVGRNGVLPQAFDQFFETAY-GTPENLA
110 120 130 140 150
170 180 190 200
pF1KB8 EPPCSG-KGEAKGEPEAPPASGLASRAEAGAEA-------------------EAEEENTN
: :. :: : : .:. :. : .:: : : .:.
NP_005 SSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRR
160 170 180 190 200 210
210 220 230 240 250 260
pF1KB8 PSSSGSAHSVAKEPA-KGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLS
: ::.: .: . . :... .. :::::::::.:.:::::::::::.::::::::::::
NP_005 PESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLS
220 230 240 250 260 270
270 280 290 300
pF1KB8 RMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL
:::::::::::::::::::::::..::::::.:.::::
NP_005 RMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
280 290 300 310
>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa)
initn: 361 init1: 306 opt: 378 Z-score: 291.7 bits: 62.2 E(85289): 1.7e-09
Smith-Waterman score: 378; 32.7% identity (57.2% similar) in 318 aa overlap (2-301:39-338)
10 20 30
pF1KB8 MFN-SVNLGNFCSPSRKERGADFGERGSCAS
:: .: : .:: ..: : : : :
NP_059 PNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLSKR--DEGSSPSLAL
10 20 30 40 50 60
40 50 60 70 80
pF1KB8 NLYLPSCTYYMPEFSTVFSFLPQAPSR---QISYPYSA-QVPP-VREVSYGLEPSGKWHH
: : :: :. .... . :.: : .. : :. . :: :.: . :..
NP_059 NTY-PS---YLSQLDSWGD--PKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAE---
70 80 90 100 110
90 100 110 120 130 140
pF1KB8 RNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSA----PHATPAGFYSSV
. . :. :: .. . :: : . : . . : . :: :: . :. . .
NP_059 KRAKSGPEAA----LYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAP
120 130 140 150 160 170
150 160 170 180 190
pF1KB8 --NKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEA
.. :. :.: . ... :: : : : . .. . : ..::. . .:.
NP_059 FEQRASLNPRA--EHLESPQLGGKVSFPETPKSDS-QTPSPNEIKTEQSLAGPKGSPSES
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB8 EAEEENTNPSSSGSAHSVAKEPAK-----GAAPNAPRTRKKRCPYSKFQIRELEREFFFN
: :. .. :: .. . ::: : : .: :::::::.: : :::.::.::
NP_059 EKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFN
240 250 260 270 280 290
260 270 280 290 300
pF1KB8 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL
.:...:.::..:. .::::::::::::::::: ::..:. :.. ...:
NP_059 MYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT
300 310 320 330 340
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 376 init1: 310 opt: 362 Z-score: 279.2 bits: 60.2 E(85289): 8.2e-09
Smith-Waterman score: 362; 43.5% identity (73.2% similar) in 138 aa overlap (165-301:274-406)
140 150 160 170 180 190
pF1KB8 AGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAE
:: :.. : ..:. :: .: : ::
NP_061 QPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASS---SAAE
250 260 270 280 290 300
200 210 220 230 240 250
pF1KB8 AGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFN
. : .: ...: ... ..: ... :. .: :::::::.: : :::.::.::
NP_061 ELSPAPSESSKASPEKDSLGNSKGENAANWL--TAKSGRKKRCPYTKHQTLELEKEFLFN
310 320 330 340 350
260 270 280 290 300
pF1KB8 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL
.:...:.::..:: ..:::::::::::::::: ::..:. :.. ...:
NP_061 MYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
360 370 380 390 400 410
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 335 init1: 304 opt: 335 Z-score: 261.9 bits: 56.3 E(85289): 7.5e-08
Smith-Waterman score: 337; 31.4% identity (55.8% similar) in 226 aa overlap (79-294:40-254)
50 60 70 80 90 100
pF1KB8 SFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPS
::: ... :: : . :
NP_008 YYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAP-
10 20 30 40 50 60
110 120 130 140 150 160
pF1KB8 TVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGD----
. ...: : . :: : . .. . : . : . ::
NP_008 ------VPSQSSVVYHPYGPQPHL---GADTRYMRTWLEPLSGAVSFPSFPAGGRHYALK
70 80 90 100 110
170 180 190 200 210 220
pF1KB8 PPAEP----PCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKE
: : : : : ::... :. .: : .: . : .. .:. . ... .
NP_008 PDAYPGRRADC-GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLD
120 130 140 150 160 170
230 240 250 260 270
pF1KB8 PAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI
:.. .: .: ::::::::.:.: :::.::.::.:.....: ...:.::::.:::::
NP_008 PSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKI
180 190 200 210 220 230
280 290 300
pF1KB8 WFQNRRMKEKKLSRDRLQYFSGNPLL
:::::::: ::.....
NP_008 WFQNRRMKMKKMNKEKTDKEQS
240 250 260
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 369 init1: 312 opt: 333 Z-score: 260.3 bits: 56.1 E(85289): 9.3e-08
Smith-Waterman score: 335; 34.2% identity (62.6% similar) in 187 aa overlap (124-294:84-268)
100 110 120 130 140 150
pF1KB8 AAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDR
::: :.. : . ... .. ... .
NP_689 CSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLE
60 70 80 90 100 110
160 170 180 190
pF1KB8 FFDNAYCGGGDPPAEP------PCSGK-GEAK-------GEPEAPPASGLASRAEAGAEA
.: .: : ..: : :.. :. . . .: ..: . .:.
NP_689 PTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEG
120 130 140 150 160 170
200 210 220 230 240 250
pF1KB8 EAEEENTNPSSSGSAHSVAKEPAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYI
:.:.. :.:. . .: . :: .: ::::::::.: : :::.::.::.:.
NP_689 AFSENNAENESGGDKPPI--DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYL
180 190 200 210 220 230
260 270 280 290 300
pF1KB8 NKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL
....: ...:.::::.::::::::::::: ::...::
NP_689 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
240 250 260 270
>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa)
initn: 356 init1: 308 opt: 334 Z-score: 259.9 bits: 56.3 E(85289): 9.7e-08
Smith-Waterman score: 341; 30.6% identity (55.9% similar) in 304 aa overlap (20-301:41-336)
10 20 30 40
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFST---
::.: : . .: ::: . . ..
NP_002 NTFLVDSLISACRSDSFYSSSASMYMPPPSADMGTYGMQTCGL-LPSLAKREVNHQNMGM
20 30 40 50 60
50 60 70 80 90
pF1KB8 -VFSFLPQA-----PSR--QISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADE
: ..::. :.: .: : . ::: .. : :. . .. .. .:
NP_002 NVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVP
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 LMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHAT---------PAGFYSSVNKNSVLPQ
..: .: : .: . : :. . : .:: : : ::. .. :.
NP_002 SYQR-LVPESCPVE---NPEVPVPGYFRLSQTYATGKTQEYNNSPEG--SSTVMLQLNPR
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 AFDRFFDNAYCGGGDPPAEPPCSGKGEAK-GEPEAPPASGLASRAEAGAEAEAEEENTNP
. . .: . . : ::. .: .. :.: :.: . : . ::. . .
NP_002 GAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKG-GLPEERSCLAEVSVSSPEV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 SSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRM
. . : . . .. . .: :::::::.: : :::.::.::.:...:.::..:.
NP_002 QEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKS
250 260 270 280 290 300
270 280 290 300
pF1KB8 LNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL
.::::::::::::::::: ::.::. :.. ...:
NP_002 VNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS
310 320 330 340
>>NP_776272 (OMIM: 142975) homeobox protein Hox-C12 [Hom (282 aa)
initn: 312 init1: 251 opt: 330 Z-score: 257.9 bits: 55.7 E(85289): 1.3e-07
Smith-Waterman score: 343; 32.6% identity (53.6% similar) in 276 aa overlap (38-290:23-272)
10 20 30 40 50 60
pF1KB8 GNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVFSFLPQAPSRQISYPYSAQV
:.:.:.: . . :: :: .::: .:
NP_776 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPS--LSYPRRDNV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 PPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHP
. : :: :.: . : .. .. :: : : . : . : ...:
NP_776 CSLSWPSA--EPC------NGYPQPYLGSPVSLN----PPFGRTCELARVEDGKGYYREP
60 70 80 90
130 140 150 160
pF1KB8 SA---------------PHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGD-------P
: : : :.. .. .. : :. .: : ::: :
NP_776 CAEGGGGGLKREERGRDPGAGPGAALLPLEPSG--PPALGFKYDYAAGGGGGDGGGGAGP
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 PAEPP-CSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG
: .:: :.. :. .:.: .... :: : ..: . :.. :.. :
NP_776 PHDPPSCQSL-------ESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWY-
160 170 180 190 200
230 240 250 260 270 280
pF1KB8 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR
: :.:::: ::::.:. ::: ::. : .:....: .:: :::.:.::::::::::
NP_776 --PINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRR
210 220 230 240 250 260
290 300
pF1KB8 MKEKKLSRDRLQYFSGNPLL
::.:.:
NP_776 MKKKRLLLREQALSFF
270 280
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 372 init1: 309 opt: 330 Z-score: 256.8 bits: 55.8 E(85289): 1.4e-07
Smith-Waterman score: 332; 40.4% identity (66.7% similar) in 141 aa overlap (158-294:219-347)
130 140 150 160 170 180
pF1KB8 SAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAE-PPCSGKGEAKGEPEA---
: :: : : .: : ...:: :
NP_055 KRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTG-GSSEPSACSD
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB8 PPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQ
: : . . : ... .... .:.. :: . .: ::::::::.:.:
NP_055 HPIPGCSLKEEEKQHSQPQQQQLDPNN----------PAANWI-HARSTRKKRCPYTKYQ
250 260 270 280 290
250 260 270 280 290 300
pF1KB8 IRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPL
:::.::.::.:.....: ...:.::::.::::::::::::: ::.:...
NP_055 TLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
300 310 320 330 340 350
pF1KB8 L
304 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:31:44 2016 done: Sun Nov 6 04:31:46 2016
Total Scan time: 8.730 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]