FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8927, 273 aa
  1>>>pF1KB8927 273 - 273 aa - 273 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4240+/-0.000804; mu= 8.3078+/- 0.049
 mean_var=201.4754+/-40.518, 0's: 0 Z-trim(116.1): 156  B-trim: 898 in 1/52
 Lambda= 0.090357
 statistics sampled from 16488 (16657) to 16488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.512), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS31305.1 HMX2 gene_id:3167|Hs108|chr10          ( 273) 1882 256.8 1.2e-68
CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10        ( 357)  495 76.1 3.8e-14
CCDS47018.1 HMX1 gene_id:3166|Hs108|chr4           ( 348)  468 72.6 4.3e-13


>>CCDS31305.1 HMX2 gene_id:3167|Hs108|chr10               (273 aa)
 initn: 1882 init1: 1882 opt: 1882  Z-score: 1345.9  bits: 256.8 E(32554): 1.2e-68
Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRV
              190       200       210       220       230       240

              250       260       270   
pF1KB8 PVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY
       :::::::::::::::::::::::::::::::::
CCDS31 PVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY
              250       260       270   

>>CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10             (357 aa)
 initn: 543 init1: 455 opt: 495  Z-score: 367.4  bits: 76.1 E(32554): 3.8e-14
Smith-Waterman score: 555; 41.2% identity (62.2% similar) in 291 aa overlap (7-264:72-353)

                                       10        20        30      
pF1KB8                         MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPRE
                                     :.::  :  :...:.....   :    :: 
CCDS41 HRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKG--ALEGAAGFALSQV---GDLAFPRF
              50        60        70          80           90      

         40        50        60         70         80        90    
pF1KB8 PVGWPARKRSLSVSSEEEEPDDGWKAPACFCP-DQHGPK-EQGPKHHPPIPFPCLGTPKG
        .  ::.. .: .   :. :  .:  :  . :   : :. : . :       :  :: . 
CCDS41 EI--PAQRFALPAHYLERSP--AWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRD
          100       110         120       130       140       150  

              100             110       120               130      
pF1KB8 SG----GSGPGGLE---RTP---FLSPSHSDFKEEKERLLP--------AGSPSPGSERP
       :      . :   :   ..:   .:  : :. .... .  :        :.. .::.:  
CCDS41 SPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDW
            160       170       180       190       200       210  

        140         150       160       170       180       190    
pF1KB8 RDGGA--ERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVK
       . :.   :.. .  :::::::::::::.:::::::::::::::::: ::.::.:::::::
CCDS41 KKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVK
            220       230       240       250       260       270  

          200       210       220       230               240      
pF1KB8 TWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLR--------VPVPRS-
        :::::::::::::.:::::::..::.:: .: .:......:  .        .::: : 
CCDS41 IWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQ
            280       290       300       310       320       330  

           250       260       270   
pF1KB8 --LAFPAPLYYPGSNLSALPLYNLYNKLDY
         :.:: :.::    .:..::         
CCDS41 PLLTFPHPVYYSHPVVSSVPLLRPV     
            340       350            

>>CCDS47018.1 HMX1 gene_id:3166|Hs108|chr4                (348 aa)
 initn: 466 init1: 440 opt: 468  Z-score: 348.5  bits: 72.6 E(32554): 4.3e-13
Smith-Waterman score: 485; 39.4% identity (56.6% similar) in 279 aa overlap (34-273:52-326)

            10        20        30        40        50           60
pF1KB8 KEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEE---PDDGW
                                     :..  .  ::.: :.   .      :    
CCDS47 ENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEA
              30        40        50        60        70        80 

               70          80        90           100         110  
pF1KB8 KAPACFCPDQHG--PKEQGPKHHPPIPFPCLGT----PKGSGGSGPGGL--ERTPFLSPS
       .: : . :   :  :.   :   ::. . : :.    :.. :: : :::  . .   :: 
CCDS47 RARALLGPGALGLGPRPP-PGPGPPFALGCGGAARWYPRAHGGYG-GGLSPDTSDRDSPE
              90        100       110       120        130         

            120       130                               140        
pF1KB8 HSDFKEEKERLLPAGSPSPGS------------------------ERPRDGGAERQA---
        ..   . :   : : :.::.                        : :  .:  : .   
CCDS47 TGEEMGRAEGAWPRG-PGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGV
     140       150        160       170       180       190        

          150       160       170       180       190       200    
pF1KB8 -GAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKW
        :. :::::::::::::.:::::::.::::::.::: ::.:::::::::: :::::::::
CCDS47 GGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKW
      200       210       220       230       240       250        

          210       220       230       240       250       260    
pF1KB8 KRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPL
       ::::.::::::...  .:: :: .:.....:    . .    ..: ::  :..     ::
CCDS47 KRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLA-PAAPAPPPPL
      260       270       280       290       300        310       

          270                         
pF1KB8 YNLYNKLDY                      
        .. . : :                      
CCDS47 LGFSGALAYPLAAFPAAASVPFLRAQMPGLV
       320       330       340        




273 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:59:14 2016 done: Sun Nov  6 04:59:14 2016
 Total Scan time:  2.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]