Result of FASTA (omim) for
pFN21AB8921
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8921, 267 aa
1>>>pF1KB8921 267 - 267 aa - 267 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9285+/-0.000305; mu= 5.2753+/- 0.019
mean_var=197.0111+/-39.514, 0's: 0 Z-trim(123.6): 259 B-trim: 47 in 1/54
Lambda= 0.091375
statistics sampled from 43414 (43706) to 43414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.512), width: 16
Scan time: 8.890
The best scores are: opt bits E(85289)
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 1777 245.6 6.9e-65
XP_016864978 (OMIM: 123101,168500,168550,604757) P ( 134) 862 124.7 8.6e-29
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 835 121.5 1.8e-27
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 346 57.0 4.5e-08
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 305 51.7 2e-06
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 303 51.4 2.5e-06
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 300 51.1 3.7e-06
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 299 50.9 3.7e-06
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 295 50.3 4.9e-06
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 291 49.8 6.5e-06
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 291 49.8 6.5e-06
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 282 48.6 1.5e-05
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 282 48.6 1.7e-05
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 279 48.3 2.4e-05
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 278 48.2 2.6e-05
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 275 47.6 2.7e-05
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 274 47.5 2.8e-05
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 276 47.9 3.1e-05
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 272 47.2 3.3e-05
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 272 47.3 4.2e-05
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 271 47.2 4.7e-05
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 264 46.0 5.3e-05
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 264 46.0 5.3e-05
NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 268 46.8 5.6e-05
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 264 46.3 9.2e-05
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 260 45.8 0.00013
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 258 45.4 0.00013
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 253 44.6 0.00015
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 253 44.6 0.00015
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 255 44.9 0.00016
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 257 45.4 0.00018
NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 250 44.3 0.00027
XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204) 248 44.0 0.00027
NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 252 44.7 0.00029
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 248 44.1 0.00033
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 252 44.8 0.00033
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 252 44.8 0.00033
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033
NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252) 247 43.9 0.00034
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 244 43.4 0.00039
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 244 43.4 0.00039
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 245 43.7 0.00041
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 242 43.1 0.00044
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 248 44.3 0.00046
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 248 44.3 0.00046
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 248 44.3 0.00046
>>NP_002440 (OMIM: 123101,168500,168550,604757) homeobox (267 aa)
initn: 1777 init1: 1777 opt: 1777 Z-score: 1285.9 bits: 245.6 E(85289): 6.9e-65
Smith-Waterman score: 1777; 99.6% identity (99.6% similar) in 267 aa overlap (1-267:1-267)
10 20 30 40 50 60
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASY
190 200 210 220 230 240
250 260
pF1KB8 PFHRPVLPIPPVGLYATPVGYGMYHLS
:::::::::::::::::::::::::::
NP_002 PFHRPVLPIPPVGLYATPVGYGMYHLS
250 260
>>XP_016864978 (OMIM: 123101,168500,168550,604757) PREDI (134 aa)
initn: 892 init1: 862 opt: 862 Z-score: 637.9 bits: 124.7 E(85289): 8.6e-29
Smith-Waterman score: 862; 96.9% identity (98.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN
:::::: . .:
XP_016 RYSPPPSECAPGQE
130
>>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa)
initn: 825 init1: 596 opt: 835 Z-score: 614.1 bits: 121.5 E(85289): 1.8e-27
Smith-Waterman score: 907; 58.9% identity (78.5% similar) in 275 aa overlap (16-267:31-303)
10 20 30 40
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSL
..:...:. . . :. : .:. . :. : :
NP_002 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPK-VSPSLL
10 20 30 40 50
50 60 70 80 90
pF1KB8 PFSVEALMSDKKPP--KEASPLPAESA-SAGATLRPLLL--SGHGAREA-HSPGPL----
::::::::.:.. : ::.. :.:.. .::.. .:: . .. :: .: :: ::
NP_002 PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFS
60 70 80 90 100 110
100 110 120 130 140
pF1KB8 ----VKPFETASVKSENSE--DGAAWMQEPGRYSPPP-RHTSPTTCTLRKHKTNRKPRTP
.: : : ::.:. : . . ::: : :.:::: :. :: .:::::::::::::::
NP_002 VGGLLKLPEDALVKAESPEKPERTPWMQSP-RFSPPPARRLSPPACTLRKHKTNRKPRTP
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 FTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKL
:::.:::::::::::::::::::::::::::.::::::::::::::::::::::::::::
NP_002 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKL
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 KMAAKPMLP-SSFSLPFPISSPLQAA-----SIYGASYPFHRPVLPIPPVGLYATPVGYG
::::::::: ..:.: ::...: .: :.:::: ::.: .::. :::::.. :::.
NP_002 KMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYS
240 250 260 270 280 290
pF1KB8 MYHLS
::::.
NP_002 MYHLT
300
>>NP_005212 (OMIM: 220600,600028) homeobox protein DLX-5 (289 aa)
initn: 280 init1: 243 opt: 346 Z-score: 266.0 bits: 57.0 E(85289): 4.5e-08
Smith-Waterman score: 346; 32.3% identity (58.6% similar) in 251 aa overlap (14-255:6-252)
10 20 30 40 50 60
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK
:.. :.. .: .: . .: .. . .:: : : :: :
NP_005 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPES-SATDSDYYSPT
10 20 30 40 50
70 80 90 100 110
pF1KB8 EASP---LPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQ
..: ::: : .: : . ::. . . : .: . : : . :.:. .
NP_005 GGAPHGYCSPTSASYGKALNPYQYQYHGVNGSAGSYP-AKAYADYSYASSYHQYGGAYNR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 EPGRYSPPPRH-TSPTTCTLR-KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEF
:. . : .. : : . . : : ::::: ... :: ::.:.:.. :::.. ::::.
NP_005 VPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 SSSLNLTETQVKIWFQNRRAKAKR-LQEAEL--EKLKMAAKPMLPSSFSLPFPISSPLQA
..::.::.:::::::::.:.: :. ....:. :. .. :: .: . : . : :.
NP_005 AASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSP-AVWEP-QG
180 190 200 210 220
240 250 260
pF1KB8 ASIYGASYPF-HRPVLPIPPVGLYATPVGYGMYHLS
.: . .: : :. :.. :
NP_005 SSRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLALASGTL
230 240 250 260 270 280
>>XP_011533177 (OMIM: 600297) PREDICTED: homeobox protei (321 aa)
initn: 250 init1: 189 opt: 305 Z-score: 236.2 bits: 51.7 E(85289): 2e-06
Smith-Waterman score: 305; 29.5% identity (56.1% similar) in 271 aa overlap (12-258:60-317)
10 20 30
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGP------GPGPGGAEGAA
:: ::. ..: : .:::: .::
XP_011 NFVSPPQYPDYGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 EERRVKVSS-LPFSVEALMS--DKKPPKEASPLPAESASAGATLRPLLLSGHGAREAHSP
. ... : .. . : : .: .. : . :.: . :: .. .:
XP_011 NAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLL-------QTLNP
90 100 110 120 130 140
100 110 120 130 140
pF1KB8 GPLVKPFETASVKSENSEDGAA------WMQEPGRYSPPPRH-TSPTTCTLRKHKTNRKP
:: : .:.. .:. :. ::..:.. : . :::.. . : .:. :
XP_011 GP---PGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQALTSPSSTV--KTRTKDKY
150 160 170 180 190
150 160 170 180 190 200
pF1KB8 RTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAEL
:. .: : : ::..:. ..:..: ..::....:.:.: :::::::::::: ..... .:
XP_011 RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKL
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 EKLKMAAKPMLPSSFSLPF-----PISS---PLQAASIYGASYPFHRPVLPIPPVGLYAT
.. .. :. : : :. : ::. .: :: : : . . :.: .
XP_011 QQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGV-LGPTGGVLN
260 270 280 290 300 310
260
pF1KB8 PVGYGMYHLS
:
XP_011 PTVTQ
320
>>NP_064448 (OMIM: 605211) barH-like 1 homeobox protein (327 aa)
initn: 318 init1: 237 opt: 303 Z-score: 234.6 bits: 51.4 E(85289): 2.5e-06
Smith-Waterman score: 334; 34.1% identity (54.3% similar) in 267 aa overlap (2-248:49-296)
10 20
pF1KB8 MASP-SKGNDLFSPDEEGPAVVAGPGPG---
.:: : : : . :. ..:::
NP_064 SPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHL
20 30 40 50 60 70
30 40 50 60 70 80
pF1KB8 -PGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGA
:: . :. : : : : .. ...: :: .: .:.: : . .:
NP_064 QPGQLSAPAQSRTVTSS---FLIRDILADCKPLAACAPY----SSSGQPAAPEPGGRLAA
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB8 REAHS-PGPLVKPFETASVKSENS--EDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNR
. :.. : : .:: :: . :.: .. .: ::: : .: :
NP_064 KAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISS-SRDSPPVRLKKP-----------R
140 150 160 170
150 160 170 180 190 200
pF1KB8 KPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEA
: :: :: :: :::.:....:::. .: :...:::::.:::: :.::::.: :: .
NP_064 KARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV
180 190 200 210 220 230
210 220 230 240 250
pF1KB8 ELEKLKMAA-----KPMLPSSFSLPFPISSPLQ-AASIY---GASYP---FHRPVLPIPP
:: : :. . :.:: . : . : :. .:..: : : : ..::..:
NP_064 GLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRIL
240 250 260 270 280 290
260
pF1KB8 VGLYATPVGYGMYHLS
NP_064 IHGLQGASEPPPPLPPLAGVLPRAAQPR
300 310 320
>>NP_064447 (OMIM: 605212) barH-like 2 homeobox protein (387 aa)
initn: 252 init1: 225 opt: 300 Z-score: 231.5 bits: 51.1 E(85289): 3.7e-06
Smith-Waterman score: 300; 28.4% identity (56.8% similar) in 257 aa overlap (2-251:99-346)
10 20 30
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGA
:.:... . . :... : : : :
NP_064 TMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPL-PQQQQPLPPQQPPPPPPQQ
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB8 EG-AAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGAREAH
: :: :...:: : .. ...:.:: .: . .: : . .....:.
NP_064 LGSAASAPRTSTSS--FLIKDILGDSKPLAACAPYSTSVSSPHHTPKQ---ESNAVHESF
130 140 150 160 170 180
100 110 120 130 140
pF1KB8 SPGPLVKPFETASVKSENSEDGAAWMQEPGRYSPPPRH-TSPTTCTLRKHKTNRKPRTPF
: : . : ...: .. ::. . .. : :. :: . : :: :: :
NP_064 RP-KLEQ--EDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAF
190 200 210 220 230
150 160 170 180 190 200
pF1KB8 TTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLK
. :: :::.:....:::. .: .....::::.:::: :.::::.: :: . :: :
NP_064 SDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLA
240 250 260 270 280 290
210 220 230 240 250 260
pF1KB8 MAA-----KPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMY
:. . :.:: . . . ..... .:. .. . ::
NP_064 EAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPR
300 310 320 330 340 350
pF1KB8 HLS
NP_064 VLIHGLGPGGQPALNPLSSPIPGTPHPR
360 370 380
>>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa)
initn: 258 init1: 258 opt: 299 Z-score: 231.5 bits: 50.9 E(85289): 3.7e-06
Smith-Waterman score: 308; 30.0% identity (53.2% similar) in 263 aa overlap (24-262:4-264)
10 20 30 40 50
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEG----AAEERRVKVSSLP--FSVEALMS
:: .:. :.: :.. : .: :.::...
NP_038 MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILG
10 20 30 40
60 70 80 90 100
pF1KB8 DKKPPKEASPLPAESASAGATLRPLLLSGH---------GAREAHSPGPLVKPFETASVK
: . .::: .. :: : :... :.. . :.: : :
NP_038 FTKDDGILGTFPAERGARGAKERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRP
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB8 SENSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQ
.: : : :: : . . . .: .:. :: ::: :: ::: :....
NP_038 YCPKEPGEA-RPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSH
110 120 130 140 150
170 180 190 200 210 220
pF1KB8 YLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFP
: .. : :.....:: :..:..:::::::: .: .. :. ..:. .:.: : : :
NP_038 YPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSA
160 170 180 190 200 210
230 240 250 260
pF1KB8 ISSPLQAA-----SIYGASYPFHRPVLPIPPVG----LYATPVGYGMYHLS
::: :. . :.. :.. . : : : : . : :.:
NP_038 TLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLP-GFGPPAQSLPASYTPPP
220 230 240 250 260 270
NP_038 PPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQA
280 290 300 310 320 330
>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa)
initn: 295 init1: 242 opt: 295 Z-score: 229.4 bits: 50.3 E(85289): 4.9e-06
Smith-Waterman score: 295; 40.2% identity (64.4% similar) in 132 aa overlap (138-262:128-255)
110 120 130 140 150 160
pF1KB8 NSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYL
: . ::::. :. .:.:::::.:.:..::
NP_001 ASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYL
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 SIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF---
: :: ...:.:.:: ::::::::::: : :: .. . .:..:..:. : ..:
NP_001 SAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDK--SLELAGHPLTPRRVAVPVLVR
160 170 180 190 200 210
230 240 250 260
pF1KB8 ---PISSPLQAASIYGASYPFHRPVLPIPPVGLYA-TPVGYGMYHLS
: .: .: . . :. : : : :. .: : :
NP_001 DGKPCLGPGPGAPAFPS--PYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPL
220 230 240 250 260 270
NP_001 ASAGFGHGGQNATPQGHLAATLQGVRAW
280 290 300
>>NP_005510 (OMIM: 600647) homeobox protein HMX2 [Homo s (273 aa)
initn: 292 init1: 237 opt: 291 Z-score: 227.1 bits: 49.8 E(85289): 6.5e-06
Smith-Waterman score: 291; 34.9% identity (54.5% similar) in 255 aa overlap (23-265:29-269)
10 20 30 40
pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEG-AAEERRVKVSSL---P---F
::. .: : :..: ..::: : .
NP_005 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 SVEA-LMSDKKPPKEASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVK-PFETASVK
.. : . :.. ::: .: : .: : :: : . :: . : .
NP_005 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSG------PGGLERTPFLSPS-H
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 SENSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHK--TNRKPRTPFTTSQLLALERKFRQ
:. .:. . :. :: : : ... ...: :: :. ::. :: : .
NP_005 SDFKEEKERLL--PAG-SPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDM
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 KQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMA-AKPMLPSSFSL
:.::: .::: ..:::.::::::: :::::: : :: :::: .:: :. . :. :
NP_005 KRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPL
180 190 200 210 220 230
230 240 250 260
pF1KB8 PFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS
: :: :.. . ..: : : : .: : :. :..:.
NP_005 VFRDSSLLRVPVPRSLAFP--AP-LYYPGSNLSALPL-YNLYNKLDY
240 250 260 270
267 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:21:21 2016 done: Mon Nov 7 01:21:22 2016
Total Scan time: 8.890 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]