Result of FASTA (omim) for
pFN21AB8915
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8915, 257 aa
1>>>pF1KB8915 257 - 257 aa - 257 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8638+/-0.00027; mu= 18.4498+/- 0.017
mean_var=81.3684+/-17.268, 0's: 0 Z-trim(120.0): 74 B-trim: 1990 in 1/53
Lambda= 0.142183
statistics sampled from 34660 (34743) to 34660 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.407), width: 16
Scan time: 7.150
The best scores are: opt bits E(85289)
NP_068804 (OMIM: 601665,604630) nuclear receptor s ( 257) 1783 374.6 9.9e-104
XP_011540599 (OMIM: 601665,604630) PREDICTED: nucl ( 207) 1251 265.3 6.1e-71
XP_016862609 (OMIM: 601426) PREDICTED: nuclear rec ( 596) 295 69.7 1.4e-11
NP_001278623 (OMIM: 601426) nuclear receptor subfa ( 596) 295 69.7 1.4e-11
XP_011532366 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 295 69.7 1.4e-11
XP_011532367 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 295 69.7 1.4e-11
NP_003289 (OMIM: 601426) nuclear receptor subfamil ( 615) 295 69.7 1.4e-11
XP_011532368 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 295 69.7 1.4e-11
XP_011532365 (OMIM: 601426) PREDICTED: nuclear rec ( 629) 295 69.7 1.4e-11
XP_011532363 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11
XP_016862608 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11
XP_011532360 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11
XP_011532361 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11
XP_016862607 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11
NP_000466 (OMIM: 300018,300200,300473) nuclear rec ( 470) 293 69.2 1.5e-11
NP_003260 (OMIM: 603849) nuclear receptor subfamil ( 385) 277 65.8 1.3e-10
NP_001273031 (OMIM: 603849) nuclear receptor subfa ( 422) 277 65.9 1.4e-10
NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 256 61.5 2.4e-09
XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 256 61.5 2.7e-09
XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 256 61.5 2.7e-09
XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 256 61.6 2.8e-09
NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 256 61.7 3.2e-09
XP_016884827 (OMIM: 300018,300200,300473) PREDICTE ( 400) 247 59.7 9.5e-09
NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 240 58.3 2.6e-08
XP_006719648 (OMIM: 601529) PREDICTED: nuclear rec ( 426) 233 56.8 7.2e-08
NP_003288 (OMIM: 601529) nuclear receptor subfamil ( 603) 233 57.0 9.2e-08
XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 222 54.4 2.5e-07
NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 222 54.6 3.4e-07
NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 214 52.7 7.7e-07
NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 214 52.7 7.7e-07
NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 214 52.8 8.1e-07
NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 214 52.9 1.1e-06
NP_055064 (OMIM: 268100,604485,611131) photorecept ( 410) 212 52.5 1.4e-06
XP_011537019 (OMIM: 601529) PREDICTED: nuclear rec ( 507) 207 51.6 3.3e-06
NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 193 48.5 1.8e-05
NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 193 48.5 1.8e-05
XP_005245119 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 194 48.9 2e-05
XP_011507684 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 194 48.9 2e-05
NP_001263393 (OMIM: 604453) nuclear receptor subfa ( 469) 194 48.9 2e-05
NP_003813 (OMIM: 604453) nuclear receptor subfamil ( 495) 194 48.9 2.1e-05
XP_011507682 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05
XP_011507686 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05
XP_016856393 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05
XP_011507683 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05
NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 194 48.9 2.2e-05
NP_995582 (OMIM: 604453) nuclear receptor subfamil ( 541) 194 48.9 2.2e-05
NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 193 48.7 2.3e-05
NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 182 46.3 9.2e-05
NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 182 46.4 0.0001
NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 182 46.4 0.00011
>>NP_068804 (OMIM: 601665,604630) nuclear receptor subfa (257 aa)
initn: 1783 init1: 1783 opt: 1783 Z-score: 1983.2 bits: 374.6 E(85289): 9.9e-104
Smith-Waterman score: 1783; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KB8 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI
190 200 210 220 230 240
250
pF1KB8 IGDVDIAGLLGDMLLLR
:::::::::::::::::
NP_068 IGDVDIAGLLGDMLLLR
250
>>XP_011540599 (OMIM: 601665,604630) PREDICTED: nuclear (207 aa)
initn: 1251 init1: 1251 opt: 1251 Z-score: 1394.6 bits: 265.3 E(85289): 6.1e-71
Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)
10 20 30 40 50 60
pF1KB8 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI
XP_011 TEAQRLSDLPKVTQLISDSAGIHTQEA
190 200
>>XP_016862609 (OMIM: 601426) PREDICTED: nuclear recepto (596 aa)
initn: 277 init1: 197 opt: 295 Z-score: 329.1 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:384-580)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
XP_016 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
360 370 380 390 400 410
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
XP_016 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
420 430 440 450 460
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
XP_016 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
470 480 490 500 510 520
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
XP_016 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
530 540 550 560 570 580
XP_016 YNGQITGASL
590
>>NP_001278623 (OMIM: 601426) nuclear receptor subfamily (596 aa)
initn: 277 init1: 197 opt: 295 Z-score: 329.1 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:384-580)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
NP_001 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
360 370 380 390 400 410
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
NP_001 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
420 430 440 450 460
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
NP_001 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
470 480 490 500 510 520
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
NP_001 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
530 540 550 560 570 580
NP_001 YNGQITGASL
590
>>XP_011532366 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
380 390 400 410 420 430
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
440 450 460 470 480
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
490 500 510 520 530 540
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
550 560 570 580 590 600
XP_011 YNGQITGASL
610
>>XP_011532367 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
380 390 400 410 420 430
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
440 450 460 470 480
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
490 500 510 520 530 540
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
550 560 570 580 590 600
XP_011 YNGQITGASL
610
>>NP_003289 (OMIM: 601426) nuclear receptor subfamily 2 (615 aa)
initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
NP_003 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
380 390 400 410 420 430
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
NP_003 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
440 450 460 470 480
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
NP_003 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
490 500 510 520 530 540
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
NP_003 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
550 560 570 580 590 600
NP_003 YNGQITGASL
610
>>XP_011532368 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
380 390 400 410 420 430
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
440 450 460 470 480
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
490 500 510 520 530 540
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
550 560 570 580 590 600
XP_011 YNGQITGASL
610
>>XP_011532365 (OMIM: 601426) PREDICTED: nuclear recepto (629 aa)
initn: 277 init1: 197 opt: 295 Z-score: 328.8 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:417-613)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
390 400 410 420 430 440
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
450 460 470 480 490
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
500 510 520 530 540 550
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
560 570 580 590 600 610
XP_011 YNGQITGASL
620
>>XP_011532363 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa)
initn: 277 init1: 197 opt: 295 Z-score: 328.7 bits: 69.7 E(85289): 1.4e-11
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:436-632)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
410 420 430 440 450 460
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
470 480 490 500 510
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
520 530 540 550 560 570
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
580 590 600 610 620 630
XP_011 YNGQITGASL
640
257 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:47:12 2016 done: Sat Nov 5 22:47:13 2016
Total Scan time: 7.150 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]