Result of FASTA (omim) for
pFN21AB8906
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8906, 239 aa
1>>>pF1KB8906 239 - 239 aa - 239 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8665+/-0.000263; mu= 11.6322+/- 0.017
mean_var=184.6458+/-36.785, 0's: 0 Z-trim(125.5): 216 B-trim: 0 in 0/59
Lambda= 0.094385
statistics sampled from 49234 (49496) to 49234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.58), width: 16
Scan time: 7.710
The best scores are: opt bits E(85289)
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 1647 235.0 8.9e-62
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 450 72.2 1.3e-12
XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 436 70.0 3.5e-12
NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 436 70.2 4.2e-12
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 433 69.8 6.3e-12
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 424 68.7 1.6e-11
NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371) 358 59.7 8.1e-09
NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401) 358 59.7 8.6e-09
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 322 54.7 2.1e-07
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 294 50.5 2e-06
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 294 50.7 2.5e-06
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 287 50.0 6.4e-06
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 280 49.0 1.2e-05
NP_001269359 (OMIM: 607164) transcription factor L ( 198) 270 47.4 2.2e-05
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 266 47.1 4.4e-05
NP_006553 (OMIM: 604255) transcription factor LBX1 ( 281) 262 46.5 5.9e-05
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 261 46.3 6.5e-05
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 261 46.5 7.5e-05
NP_001009812 (OMIM: 607164) transcription factor L ( 194) 246 44.1 0.00021
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 247 44.4 0.00024
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 247 44.4 0.00024
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 244 43.9 0.00028
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 245 44.3 0.00034
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 244 44.1 0.00037
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 241 43.7 0.00045
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 242 43.9 0.00048
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 236 42.7 0.00049
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 236 42.7 0.00049
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 238 43.2 0.00053
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 235 42.7 0.0007
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 239 43.7 0.00081
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 232 42.3 0.0009
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 234 42.8 0.00094
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 232 42.5 0.0011
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 231 42.3 0.0011
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 231 42.4 0.0013
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 231 42.4 0.0013
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 231 42.4 0.0013
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 228 41.8 0.0014
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 231 42.5 0.0014
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 231 42.5 0.0014
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 227 41.7 0.0015
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 227 41.7 0.0015
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 231 42.5 0.0016
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 227 41.7 0.0016
>>NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 [Hom (239 aa)
initn: 1647 init1: 1647 opt: 1647 Z-score: 1230.1 bits: 235.0 E(85289): 8.9e-62
Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW
190 200 210 220 230
>>NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 [Hom (354 aa)
initn: 449 init1: 338 opt: 450 Z-score: 347.2 bits: 72.2 E(85289): 1.3e-12
Smith-Waterman score: 450; 51.7% identity (73.2% similar) in 149 aa overlap (81-225:186-334)
60 70 80 90 100 110
pF1KB8 YPSSDESSLETSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLS
: :.:::::::.::. ::::::.::.:::
NP_149 AGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLS
160 170 180 190 200 210
120 130 140 150 160
pF1KB8 APEREQLASLLRLTPTQVKIWFQNHRYKLKR-ARAPGAAESPDLAASAELHAAPGLLRRV
:::::.:::...::::::::::::::::.:: :. .: . . .. . : :::
NP_149 APEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRV
220 230 240 250 260 270
170 180 190 200 210 220
pF1KB8 VVPVLVRDGQPCGGGGGGEV-GTAAAQEKCGAPPAAACPL-PGYPAF-GPGSALGLFPAY
.:::::.::.:: .:.. . : :. : .: : :. ::. :::..:. . :
NP_149 AVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAA
280 290 300 310 320 330
230
pF1KB8 QHLASPALVSWNW
NP_149 AGEYSGGVLGANLLYGRTW
340 350
>>XP_006723629 (OMIM: 604612) PREDICTED: homeobox protei (202 aa)
initn: 545 init1: 388 opt: 436 Z-score: 339.7 bits: 70.0 E(85289): 3.5e-12
Smith-Waterman score: 508; 49.5% identity (67.5% similar) in 194 aa overlap (52-239:24-202)
30 40 50 60 70
pF1KB8 AQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRPSARPASPGS--
: .: :: .. :.... :. .::.
XP_006 MIFSATSPPKFSPTLLHGLAAGAPPQDSSS-KSPEPSADESPDNDKETPGGGG
10 20 30 40 50
80 90 100 110 120 130
pF1KB8 DAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKL
:: :..::::::::::: ::::::::::::::::::.::::.:::::::::::::::::.
XP_006 DAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKM
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB8 KRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCG
::::: . : : . : :::.::::::::.:: . . .. ::: . :
XP_006 KRARAEKGMEVTPLPS-------P---RRVAVPVLVRDGKPCHALKAQDL--AAATFQAG
120 130 140 150 160
200 210 220 230
pF1KB8 APPAA--ACPLPG--YPAFGPGSALGLFPAYQHLASPALVSWNW
: .: : : : : ... .:. . :.. .:.:
XP_006 IPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQ--QWTW
170 180 190 200
>>NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 [Hom (273 aa)
initn: 557 init1: 388 opt: 436 Z-score: 338.2 bits: 70.2 E(85289): 4.2e-12
Smith-Waterman score: 526; 45.8% identity (63.6% similar) in 236 aa overlap (21-239:54-273)
10 20 30 40
pF1KB8 MATSGRLSFTVRSLLDLPEQDA-QHLPRREPEPRAPQPDPCAAWLDSERG
:: : :: ..: . .: . :: : .:
NP_002 EEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNPF-YDSSDNPYTRWLASTEG
30 40 50 60 70 80
50 60 70 80 90
pF1KB8 -HY---------PSSDESSLETSPPDSSQRPSARPASPGS--DAEKRKKRRVLFSKAQTL
.: : .: :: .. :.... :. .::. :: :..:::::::::::
NP_002 LQYSLHGLAAGAPPQDSSS-KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 ELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASA
::::::::::::::::::.::::.:::::::::::::::::.::::: . : : .
NP_002 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPS--
150 160 170 180 190
160 170 180 190 200 210
pF1KB8 ELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAA--ACPLPG--YPA
: :::.::::::::.:: . . .. ::: . : : .: : : : :
NP_002 -----P---RRVAVPVLVRDGKPCHALKAQDL--AAATFQAGIPFSAYSAQSLQHMQYNA
200 210 220 230 240
220 230
pF1KB8 FGPGSALGLFPAYQHLASPALVSWNW
... .:. . :.. .:.:
NP_002 QYSSASTPQYPTAHPLVQAQ--QWTW
250 260 270
>>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61 (324 aa)
initn: 470 init1: 318 opt: 433 Z-score: 335.1 bits: 69.8 E(85289): 6.3e-12
Smith-Waterman score: 480; 41.0% identity (55.4% similar) in 249 aa overlap (18-238:59-289)
10 20 30 40
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPE-PRAPQPDPCAAWLDS
:: : ::. . : :::.: ::. . .
NP_004 AAGELSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPA
30 40 50 60 70 80
50 60 70 80
pF1KB8 ERGHYPS--SDESS-------------------LETSPPDSSQRPSARPASPGSDAEKRK
. :: :: . :: . :...:: :: .:.
NP_004 APAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRAR---------RRR
90 100 110 120 130
90 100 110 120 130 140
pF1KB8 KRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAP
: :::::.::. ::::::.::::::::::.::::.:.:: :::::::::.::: :: :
NP_004 KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQD
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB8 GAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAA
. : : : ::..::::::::.:: : . . : : : .
NP_004 QTLELVGLPPP-----PPPPARRIAVPVLVRDGKPCLG----DSAPYAPAYGVGLNPYGY
200 210 220 230 240 250
210 220 230
pF1KB8 CPLPGYPAFG-----PG-SALGLFPAYQHLASPALVSWNW
:.::..: :: : . .:: :.:: .. :
NP_004 NAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQ
260 270 280 290 300 310
NP_004 SNSGVSTLHGIRAW
320
>>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom (364 aa)
initn: 502 init1: 307 opt: 424 Z-score: 327.9 bits: 68.7 E(85289): 1.6e-11
Smith-Waterman score: 443; 47.4% identity (66.1% similar) in 192 aa overlap (31-219:103-270)
10 20 30 40 50 60
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
::. . .: .. .:.. . ..:::
NP_660 LNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVV---RDRSQKSCQLKKSLE
80 90 100 110 120
70 80 90 100 110 120
pF1KB8 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
:. .. . : :: .: : :.: :::::.::..::::::.:::::::::::.:::
NP_660 TAGDCKAAEESERP-KPRS----RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
:.:: :::::::::.::: :: : .: .:.: :: : :::.::::::::.:
NP_660 LKLTSTQVKIWFQNRRYKCKRQRQD---KSLELGA----HAPPPPPRRVAVPVLVRDGKP
190 200 210 220 230
190 200 210 220 230
pF1KB8 CGGGGGGEVGTAAAQEKCGAP---PAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSW
: : .:: ::: :.: ..::.: :..
NP_660 CV--------TPSAQAY-GAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYS
240 250 260 270 280
pF1KB8 NW
NP_660 SSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTA
290 300 310 320 330 340
>>NP_003308 (OMIM: 118700,188550,600635,610978) homeobox (371 aa)
initn: 479 init1: 325 opt: 358 Z-score: 279.2 bits: 59.7 E(85289): 8.1e-09
Smith-Waterman score: 446; 39.0% identity (58.3% similar) in 264 aa overlap (2-233:82-338)
10 20 30
pF1KB8 MATSGRLSFTVRSLLDLPE-QDAQHLPRREP
:..: . .. .. .:: ::... :
NP_003 AMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGP
60 70 80 90 100 110
40 50 60 70 80
pF1KB8 EPRAPQPDPCAAWLDSERGHYPSSDESSLET--SPPDSSQRPSARPASPGSDAEKRKKRR
. .::: .. : . . :.. : : :. . :..: :.:::
NP_003 GWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAP------RRKRR
120 130 140 150 160
90 100 110 120 130 140
pF1KB8 VLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAA
::::.::. ::::::.::.::::::::.:::...::::::::::::::::.:: ::
NP_003 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA
170 180 190 200 210 220
150 160 170 180 190
pF1KB8 ESPDLAASA------------ELHAAPGLLRRVVVPVLVRDGQPCGGG----GGGEV-GT
.. :. . .: :::.:::::.::.:: .: :.. . :
NP_003 QQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGH
230 240 250 260 270 280
200 210 220 230
pF1KB8 AA--AQEKCGAPPAAACP---------LPGYPAFGPGSALGLFPAY-QHLASPALVSWNW
: ::.. : ::: : ..:. :::: : : .: ::::
NP_003 AQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSA-GQSPDLAHHAASPAALQGQV
290 300 310 320 330 340
NP_003 SSLSHLNSSGSDYGTMSCSTLLYGRTW
350 360 370
>>NP_001073136 (OMIM: 118700,188550,600635,610978) homeo (401 aa)
initn: 479 init1: 325 opt: 358 Z-score: 278.9 bits: 59.7 E(85289): 8.6e-09
Smith-Waterman score: 446; 39.0% identity (58.3% similar) in 264 aa overlap (2-233:112-368)
10 20 30
pF1KB8 MATSGRLSFTVRSLLDLPE-QDAQHLPRREP
:..: . .. .. .:: ::... :
NP_001 AMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGP
90 100 110 120 130 140
40 50 60 70 80
pF1KB8 EPRAPQPDPCAAWLDSERGHYPSSDESSLET--SPPDSSQRPSARPASPGSDAEKRKKRR
. .::: .. : . . :.. : : :. . :..: :.:::
NP_001 GWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAP------RRKRR
150 160 170 180 190
90 100 110 120 130 140
pF1KB8 VLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAA
::::.::. ::::::.::.::::::::.:::...::::::::::::::::.:: ::
NP_001 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA
200 210 220 230 240 250
150 160 170 180 190
pF1KB8 ESPDLAASA------------ELHAAPGLLRRVVVPVLVRDGQPCGGG----GGGEV-GT
.. :. . .: :::.:::::.::.:: .: :.. . :
NP_001 QQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGH
260 270 280 290 300 310
200 210 220 230
pF1KB8 AA--AQEKCGAPPAAACP---------LPGYPAFGPGSALGLFPAY-QHLASPALVSWNW
: ::.. : ::: : ..:. :::: : : .: ::::
NP_001 AQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSA-GQSPDLAHHAASPAALQGQV
320 330 340 350 360 370
NP_001 SSLSHLNSSGSDYGTMSCSTLLYGRTW
380 390 400
>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa)
initn: 420 init1: 289 opt: 322 Z-score: 253.8 bits: 54.7 E(85289): 2.1e-07
Smith-Waterman score: 430; 43.3% identity (58.1% similar) in 203 aa overlap (28-217:65-255)
10 20 30 40 50
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWL--DSERGHYPSSD
:. . : :: : : :.:: :.
NP_001 RKSPENFQYLRMDAEPRGSEVHNAGGGGGDRKLDGSEPPGGPCEAVLEMDAERMGEPQPG
40 50 60 70 80 90
60 70 80 90 100
pF1KB8 ESSLETSPPDSSQRPSARPASPGSD-----------AEKRKKRRVLFSKAQTLELERRFR
.. .:: .. : : .. ..: :..:.: :::::.::.: :::::.
NP_001 LNA--ASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFK
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB8 QQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPG
:::::::::::.::: :.:: :::::::::.::: :: : : :: . :
NP_001 QQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQD---------KSLELAGHPL
160 170 180 190 200
170 180 190 200 210 220
pF1KB8 LLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFP
:::.::::::::.:: : : : . . .: . : : .: :
NP_001 TPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAP-YGAGYGTCYAG
210 220 230 240 250 260
230
pF1KB8 AYQHLASPALVSWNW
NP_001 APSGPAPHTPLASAGFGHGGQNATPQGHLAATLQGVRAW
270 280 290 300
>>NP_001243268 (OMIM: 602041) homeobox protein Nkx-3.1 i (159 aa)
initn: 295 init1: 274 opt: 294 Z-score: 236.4 bits: 50.5 E(85289): 2e-06
Smith-Waterman score: 294; 42.6% identity (63.6% similar) in 129 aa overlap (33-161:3-124)
10 20 30 40 50 60
pF1KB8 TSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLETS
:.:.: : : .: . : : .
NP_001 MLRVPEPRPGEAETLAE-----TEPERHLGSY
10 20
70 80 90 100 110 120
pF1KB8 PPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLR
:: . .: : : . . .:. :. ::..:..::::.: .:.::::::: .::. :.
NP_001 LLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLK
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB8 LTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCG
:: :::::::::.::: :: . ..: :: . : :
NP_001 LTETQVKIWFQNRRYKTKRKQL--SSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYY
90 100 110 120 130 140
190 200 210 220 230
pF1KB8 GGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW
NP_001 PYLYCVGSWSPAFW
150
239 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:37:18 2016 done: Tue Nov 8 04:37:20 2016
Total Scan time: 7.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]