Result of FASTA (ccds) for
pFN21AB8906
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8906, 239 aa
1>>>pF1KB8906 239 - 239 aa - 239 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1309+/-0.000644; mu= 10.0987+/- 0.040
mean_var=179.9250+/-37.633, 0's: 0 Z-trim(117.7): 152 B-trim: 944 in 1/54
Lambda= 0.095616
statistics sampled from 18381 (18553) to 18381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.57), width: 16
Scan time: 2.860
The best scores are: opt bits E(32554)
CCDS9660.1 8 gene_id:26257|Hs108|chr14 ( 239) 1647 237.9 4.6e-63
CCDS42855.1 4 gene_id:644524|Hs108|chr20 ( 354) 450 72.9 3.1e-13
CCDS13145.1 2 gene_id:4821|Hs108|chr20 ( 273) 436 70.9 9.8e-13
CCDS4387.1 5 gene_id:1482|Hs108|chr5 ( 324) 433 70.5 1.5e-12
CCDS41558.1 3 gene_id:159296|Hs108|chr10 ( 364) 424 69.3 3.8e-12
>>CCDS9660.1 8 gene_id:26257|Hs108|chr14 (239 aa)
initn: 1647 init1: 1647 opt: 1647 Z-score: 1245.6 bits: 237.9 E(32554): 4.6e-63
Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW
190 200 210 220 230
>>CCDS42855.1 4 gene_id:644524|Hs108|chr20 (354 aa)
initn: 449 init1: 338 opt: 450 Z-score: 351.1 bits: 72.9 E(32554): 3.1e-13
Smith-Waterman score: 450; 51.7% identity (73.2% similar) in 149 aa overlap (81-225:186-334)
60 70 80 90 100 110
pF1KB8 YPSSDESSLETSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLS
: :.:::::::.::. ::::::.::.:::
CCDS42 AGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLS
160 170 180 190 200 210
120 130 140 150 160
pF1KB8 APEREQLASLLRLTPTQVKIWFQNHRYKLKR-ARAPGAAESPDLAASAELHAAPGLLRRV
:::::.:::...::::::::::::::::.:: :. .: . . .. . : :::
CCDS42 APEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRV
220 230 240 250 260 270
170 180 190 200 210 220
pF1KB8 VVPVLVRDGQPCGGGGGGEV-GTAAAQEKCGAPPAAACPL-PGYPAF-GPGSALGLFPAY
.:::::.::.:: .:.. . : :. : .: : :. ::. :::..:. . :
CCDS42 AVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAA
280 290 300 310 320 330
230
pF1KB8 QHLASPALVSWNW
CCDS42 AGEYSGGVLGANLLYGRTW
340 350
>>CCDS13145.1 2 gene_id:4821|Hs108|chr20 (273 aa)
initn: 557 init1: 388 opt: 436 Z-score: 342.1 bits: 70.9 E(32554): 9.8e-13
Smith-Waterman score: 526; 45.8% identity (63.6% similar) in 236 aa overlap (21-239:54-273)
10 20 30 40
pF1KB8 MATSGRLSFTVRSLLDLPEQDA-QHLPRREPEPRAPQPDPCAAWLDSERG
:: : :: ..: . .: . :: : .:
CCDS13 EEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNPF-YDSSDNPYTRWLASTEG
30 40 50 60 70 80
50 60 70 80 90
pF1KB8 -HY---------PSSDESSLETSPPDSSQRPSARPASPGS--DAEKRKKRRVLFSKAQTL
.: : .: :: .. :.... :. .::. :: :..:::::::::::
CCDS13 LQYSLHGLAAGAPPQDSSS-KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 ELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASA
::::::::::::::::::.::::.:::::::::::::::::.::::: . : : .
CCDS13 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPS--
150 160 170 180 190
160 170 180 190 200 210
pF1KB8 ELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAA--ACPLPG--YPA
: :::.::::::::.:: . . .. ::: . : : .: : : : :
CCDS13 -----P---RRVAVPVLVRDGKPCHALKAQDL--AAATFQAGIPFSAYSAQSLQHMQYNA
200 210 220 230 240
220 230
pF1KB8 FGPGSALGLFPAYQHLASPALVSWNW
... .:. . :.. .:.:
CCDS13 QYSSASTPQYPTAHPLVQAQ--QWTW
250 260 270
>>CCDS4387.1 5 gene_id:1482|Hs108|chr5 (324 aa)
initn: 470 init1: 318 opt: 433 Z-score: 338.9 bits: 70.5 E(32554): 1.5e-12
Smith-Waterman score: 480; 41.0% identity (55.4% similar) in 249 aa overlap (18-238:59-289)
10 20 30 40
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPE-PRAPQPDPCAAWLDS
:: : ::. . : :::.: ::. . .
CCDS43 AAGELSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPA
30 40 50 60 70 80
50 60 70 80
pF1KB8 ERGHYPS--SDESS-------------------LETSPPDSSQRPSARPASPGSDAEKRK
. :: :: . :: . :...:: :: .:.
CCDS43 APAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRAR---------RRR
90 100 110 120 130
90 100 110 120 130 140
pF1KB8 KRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAP
: :::::.::. ::::::.::::::::::.::::.:.:: :::::::::.::: :: :
CCDS43 KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQD
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB8 GAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAA
. : : : ::..::::::::.:: : . . : : : .
CCDS43 QTLELVGLPPP-----PPPPARRIAVPVLVRDGKPCLG----DSAPYAPAYGVGLNPYGY
200 210 220 230 240 250
210 220 230
pF1KB8 CPLPGYPAFG-----PG-SALGLFPAYQHLASPALVSWNW
:.::..: :: : . .:: :.:: .. :
CCDS43 NAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQ
260 270 280 290 300 310
CCDS43 SNSGVSTLHGIRAW
320
>>CCDS41558.1 3 gene_id:159296|Hs108|chr10 (364 aa)
initn: 502 init1: 307 opt: 424 Z-score: 331.6 bits: 69.3 E(32554): 3.8e-12
Smith-Waterman score: 443; 47.4% identity (66.1% similar) in 192 aa overlap (31-219:103-270)
10 20 30 40 50 60
pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
::. . .: .. .:.. . ..:::
CCDS41 LNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVV---RDRSQKSCQLKKSLE
80 90 100 110 120
70 80 90 100 110 120
pF1KB8 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
:. .. . : :: .: : :.: :::::.::..::::::.:::::::::::.:::
CCDS41 TAGDCKAAEESERP-KPRS----RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
:.:: :::::::::.::: :: : .: .:.: :: : :::.::::::::.:
CCDS41 LKLTSTQVKIWFQNRRYKCKRQRQD---KSLELGA----HAPPPPPRRVAVPVLVRDGKP
190 200 210 220 230
190 200 210 220 230
pF1KB8 CGGGGGGEVGTAAAQEKCGAP---PAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSW
: : .:: ::: :.: ..::.: :..
CCDS41 CV--------TPSAQAY-GAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYS
240 250 260 270 280
pF1KB8 NW
CCDS41 SSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTA
290 300 310 320 330 340
239 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:37:18 2016 done: Tue Nov 8 04:37:18 2016
Total Scan time: 2.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]